Rmu_sc0003174.1_g000001

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003174.1
N/A
Physical Location & Seq
Forward (+)
1 .. 525
525 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ggtttagacgaagggatgaggaacaagaagaagagggaggtggtggaggcagaggaagagaaagattcagaggattggtgcttcgaatgcaaagatggtggagatcttattatttgcgactacaagtatgttgttactttccttctctactctgggtatgcatgttttccttggaatgatttgatcaaacttagtttggcattctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

68

Amino Acids

7.94

Weight (kDa)

4.46

Isoelectric Point (pI)

59.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AsuII TTCGAA 1 cut(s) 84
BccI CCATC 1 cut(s) 89
BclI TGATCA 1 cut(s) 183
BglII AGATCT 1 cut(s) 103
Bpu14I TTCGAA 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 21
BsmI GAATGC 2 cut(s) 92, 200
Bsp119I TTCGAA 1 cut(s) 84
Bsp143I GATC 2 cut(s) 103, 183
BspT104I TTCGAA 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 2 cut(s) 103, 183
BssT1I CCWWGG 1 cut(s) 170
Bst6I CTCTTC 2 cut(s) 26, 51
BstBI TTCGAA 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 2 cut(s) 106, 186
BstMBI GATC 2 cut(s) 103, 183
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNSI RCATGY 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsCI GGATG 1 cut(s) 21
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 1 cut(s) 162
DdeI CTNAG 1 cut(s) 191
DpnI GATC 2 cut(s) 105, 185
DpnII GATC 2 cut(s) 103, 183
Eam1104I CTCTTC 2 cut(s) 26, 51
EarI CTCTTC 2 cut(s) 26, 51
Eco130I CCWWGG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 1 cut(s) 165
FaiI YATR 3 cut(s) 129, 159, 163
FatI CATG 1 cut(s) 161
FbaI TGATCA 1 cut(s) 183
FokI GGATG 1 cut(s) 28
Hin1II CATG 1 cut(s) 165
HinfI GANTC 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 70, 206
HpyAV CCTTC 2 cut(s) 5, 152
HpyCH4V TGCA 2 cut(s) 90, 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 1 cut(s) 165
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 103, 183
LpnPI CCDG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 105, 185
MboI GATC 2 cut(s) 103, 183
MboII GAAGA 3 cut(s) 40, 43, 68
MflI RGATCY 1 cut(s) 103
MnlI CCTC 6 cut(s) 12, 27, 31, 40, 46, 64
Mph1103I ATGCAT 1 cut(s) 163
Mva1269I GAATGC 2 cut(s) 92, 200
MwoI GCNNNNNNNGC 1 cut(s) 87
NdeII GATC 2 cut(s) 103, 183
NlaIII CATG 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 1 cut(s) 165
NspV TTCGAA 1 cut(s) 84
PctI GAATGC 2 cut(s) 92, 200
PfeI GAWTC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 103
Sau3AI GATC 2 cut(s) 103, 183
SetI ASST 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 84
SgeI CNNG 5 cut(s) 37, 136, 165, 174, 183
StyI CCWWGG 1 cut(s) 170
TaqI TCGA 1 cut(s) 84
TfiI GAWTC 1 cut(s) 65
XceI RCATGY 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.