Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003180.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

77072 .. 79497

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ctgcttgatctccaggaggtcgagacggttctcagcgaagtcaaggccgacgacgtcaaggtcataccggcgaacaagcactgcaagtgggccgatttcatggtcctcgccaccggaaggtccacctggcacggcaagaacatcgcccaagccctgatttacaaggcagtcatcttcactttttcagggaaagtgatagttcatgctcttgatgagaatgctaaagcttactacaatctggagactctttggacaacaaagctgtctgagaaagaaccaattcaggctaatatgctggcagctggtcttgatgcttccaatctaatactttatgcatttctgtatactccattaaagcaaattcacccagtaaatacatgggttggcgctgttgttggtgctatcccaccacttctagggttgggtactgacgggattgttaacatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

149

Amino Acids

16.32

Weight (kDa)

6.07

Isoelectric Point (pI)

24.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	6 - 53	3.3e-07	Ribosomal silencing factor during starvation
UbiA	PF01040	95 - 140	6.9e-10	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AatII	GACGTC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	2 cut(s)	117, 416
AjnI	CCWGG	2 cut(s)	12, 125
AluBI	AGCT	3 cut(s)	227, 262, 302
AluI	AGCT	3 cut(s)	227, 262, 302
Alw26I	GTCTC	2 cut(s)	17, 236
AoxI	GGCC	2 cut(s)	45, 90
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	360
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	3 cut(s)	90, 103, 120
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	103, 120
BbvI	GCAGC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	2 cut(s)	14, 127
BcoDI	GTCTC	2 cut(s)	17, 236
BfaI	CTAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	390
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	2 cut(s)	14, 127
Bme18I	GGWCC	2 cut(s)	103, 120
BmgT120I	GGNCC	3 cut(s)	90, 103, 120
BmrFI	CCNGG	2 cut(s)	14, 127
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 416
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	14, 127
BseLI	CCNNNNNNNGG	2 cut(s)	117, 416
BseMII	CTCAG	2 cut(s)	46, 258
BseNI	ACTGG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	311
BshFI	GGCC	2 cut(s)	47, 92
BsiSI	CCGG	2 cut(s)	68, 114
BslI	CCNNNNNNNGG	2 cut(s)	117, 416
BsmAI	GTCTC	2 cut(s)	17, 236
BsmBI	CGTCTC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	47, 92
Bsp143I	GATC	1 cut(s)	7
BspANI	GGCC	2 cut(s)	47, 92
BspCNI	CTCAG	2 cut(s)	45, 259
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	67
BssMI	GATC	1 cut(s)	7
BssNAI	GTATAC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	54
Bst1107I	GTATAC	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	14, 127
Bst4CI	ACNGT	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	32, 267
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	2 cut(s)	17, 236
BstMBI	GATC	1 cut(s)	7
BstNI	CCWGG	2 cut(s)	14, 127
BstSCI	CCNGG	2 cut(s)	12, 125
BstV1I	GCAGC	1 cut(s)	311
BstZ17I	GTATAC	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	47, 92
BtgZI	GCGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	3 cut(s)	90, 103, 120
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	3 cut(s)	100, 203, 378
CviJI	RGCY	7 cut(s)	47, 92, 152, 227, 262, 287, 302
CviKI_1	RGCY	7 cut(s)	47, 92, 152, 227, 262, 287, 302
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	2 cut(s)	32, 267
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	103, 120
EcoRII	CCWGG	2 cut(s)	12, 125
EcoT22I	ATGCAT	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	3 cut(s)	103, 206, 381
FaiI	YATR	7 cut(s)	65, 101, 204, 293, 333, 345, 379
FatI	CATG	3 cut(s)	99, 202, 377
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	47, 92
HapII	CCGG	2 cut(s)	68, 114
HhaI	GCGC	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	103, 206, 381
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	1 cut(s)	244
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	2 cut(s)	68, 114
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	3 cut(s)	123, 345, 442
Hpy188I	TCNGA	2 cut(s)	268, 449
Hpy188III	TCNNGA	4 cut(s)	22, 209, 239, 308
Hpy8I	GTNNAC	3 cut(s)	123, 345, 442
Hpy99I	CGWCG	2 cut(s)	53, 56
HpyAV	CCTTC	1 cut(s)	111
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	84, 335
HpyF3I	CTNAG	2 cut(s)	32, 267
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	103, 206, 381
HspAI	GCGC	1 cut(s)	387
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	7
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	166
MluCI	AATT	2 cut(s)	279, 360
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	2 cut(s)	10, 116
Mph1103I	ATGCAT	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	2 cut(s)	353, 441
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	2 cut(s)	68, 114
MspR9I	CCNGG	2 cut(s)	14, 127
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	2 cut(s)	14, 127
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	103, 206, 381
NsiI	ATGCAT	1 cut(s)	337
PctI	GAATGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp6I	CCWGG	2 cut(s)	12, 125
PspGI	CCWGG	2 cut(s)	12, 125
PspPI	GGNCC	3 cut(s)	90, 103, 120
PsyI	GACNNNGTC	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	353, 441
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	3 cut(s)	90, 103, 120
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	14, 127
SetI	ASST	8 cut(s)	21, 57, 63, 122, 128, 229, 264, 304
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	2 cut(s)	103, 120
Sse9I	AATT	2 cut(s)	279, 360
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	12, 125
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	279, 360
Tru1I	TTAA	2 cut(s)	353, 441
Tru9I	TTAA	2 cut(s)	353, 441
TscAI	CASTG	1 cut(s)	86
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	2 cut(s)	88, 191
TspRI	CASTG	1 cut(s)	86
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	103, 120
XapI	RAATTY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	416
ZraI	GACGTC	1 cut(s)	55
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.