Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003191.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

54355 .. 56961

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ctgccacaccagcgccatctgaggcgtctcatcctcctctttcgctttccagttgtggtctacgtcaaatcgagcttgttacgaagaatcgaagcttggaaaatccaaggccgacccgttttccttctctggctggttctccgccattcggctacctctagactcaccactggtcgaaaaatgaccgtctcctcctcctctttggtttcttggtggtggtttggaccgtgtgaggcttggaagcccttagccttgcgaactcagcgccatcagtctcgcctcccaactctgccggaagtcgttggaattgagctaaaagttgttgggcatgttgtcaacagggttccgttgaaatccgaggtggaaagtagtggagtaggatcttggatgtggggtttatcttctctccatagggttgactggtcgattcagcatatgatagcagatatcttggaggtccaaggtgaaactgatcctgatattgaagagagaaaaaggattgaatttagagccagagataaaggattgaggttcaatgtgattaggattcaagaggcaattgggcttggtcagagaatcaaaaggtatgaaatttatgtggatggtaagagggttgcaaatggaaccacagtggggtacaagaggcttcacagacttaaaaggggagtaatccatgccaaattgtcagaattagaattgaagactcaaaagggtgcctttgattcttccattagtctacattttgatccctattggcacccaagtgggtatctactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

259

Amino Acids

30.08

Weight (kDa)

10.52

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	713, 756
AccI	GTMKAC	2 cut(s)	60, 736
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	3 cut(s)	388, 467, 740
AcsI	RAATTY	2 cut(s)	503, 591
AcyI	GRCGYC	1 cut(s)	25
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	2 cut(s)	148, 633
AgsI	TTSAA	6 cut(s)	352, 485, 503, 535, 551, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
AleI	CACNNNNGTG	1 cut(s)	762
AluBI	AGCT	3 cut(s)	75, 95, 313
AluI	AGCT	3 cut(s)	75, 95, 313
Alw26I	GTCTC	3 cut(s)	32, 193, 279
AlwI	GGATC	3 cut(s)	388, 467, 740
AoxI	GGCC	1 cut(s)	109
ApoI	RAATTY	2 cut(s)	503, 591
AspLEI	GCGC	2 cut(s)	15, 267
AspS9I	GGNCC	2 cut(s)	224, 457
AsuHPI	GGTGA	2 cut(s)	157, 476
AvaII	GGWCC	2 cut(s)	224, 457
BanI	GGYRCC	2 cut(s)	713, 756
BbsI	GAAGAC	1 cut(s)	707
BccI	CCATC	3 cut(s)	24, 276, 596
BcoDI	GTCTC	3 cut(s)	32, 193, 279
BfaI	CTAG	1 cut(s)	159
BfoI	RGCGCY	2 cut(s)	16, 268
Bme18I	GGWCC	2 cut(s)	224, 457
BmgT120I	GGNCC	2 cut(s)	224, 457
BmiI	GGNNCC	4 cut(s)	345, 625, 715, 758
BpiI	GAAGAC	1 cut(s)	707
Bpu10I	CCTNAGC	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	106, 357, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 633
Bse1I	ACTGG	3 cut(s)	50, 175, 425
BseDI	CCNNGG	3 cut(s)	106, 357, 460
BseGI	GGATG	3 cut(s)	30, 393, 607
BseLI	CCNNNNNNNGG	2 cut(s)	148, 633
BseMII	CTCAG	2 cut(s)	11, 275
BseNI	ACTGG	3 cut(s)	50, 175, 425
BseRI	GAGGAG	4 cut(s)	26, 181, 184, 187
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	2 cut(s)	713, 756
BsiSI	CCGG	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	148, 633
BsmAI	GTCTC	3 cut(s)	32, 193, 279
BsmBI	CGTCTC	2 cut(s)	32, 193
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	380, 472, 745
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	12, 274
BspLI	GGNNCC	4 cut(s)	345, 625, 715, 758
BspPI	GGATC	3 cut(s)	388, 467, 740
BspT107I	GGYRCC	2 cut(s)	713, 756
BsrI	ACTGG	3 cut(s)	50, 175, 425
BssECI	CCNNGG	3 cut(s)	106, 357, 460
BssMI	GATC	3 cut(s)	380, 472, 745
BssNI	GRCGYC	1 cut(s)	25
BssT1I	CCWWGG	2 cut(s)	106, 460
Bst4CI	ACNGT	3 cut(s)	187, 228, 631
Bst6I	CTCTTC	1 cut(s)	480
BstACI	GRCGYC	1 cut(s)	25
BstDEI	CTNAG	3 cut(s)	20, 247, 261
BstF5I	GGATG	3 cut(s)	30, 393, 607
BstH2I	RGCGCY	2 cut(s)	16, 268
BstHHI	GCGC	2 cut(s)	15, 267
BstKTI	GATC	3 cut(s)	383, 475, 748
BstMAI	GTCTC	3 cut(s)	32, 193, 279
BstMBI	GATC	3 cut(s)	380, 472, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 262
BstNSI	RCATGY	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	3 cut(s)	30, 393, 607
BtsIMutI	CAGTG	2 cut(s)	168, 636
CfoI	GCGC	2 cut(s)	15, 267
Cfr13I	GGNCC	2 cut(s)	224, 457
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	2 cut(s)	329, 674
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	3 cut(s)	20, 247, 261
DpnI	GATC	3 cut(s)	382, 474, 747
DpnII	GATC	3 cut(s)	380, 472, 745
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	106, 460
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	224, 457
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	106, 460
ErhI	CCWWGG	2 cut(s)	106, 460
Esp3I	CGTCTC	2 cut(s)	32, 193
FaeI	CATG	2 cut(s)	332, 677
FaiI	YATR	7 cut(s)	330, 411, 435, 437, 588, 597, 675
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FatI	CATG	2 cut(s)	328, 673
FauNDI	CATATG	1 cut(s)	435
FblI	GTMKAC	2 cut(s)	60, 736
FokI	GGATG	3 cut(s)	17, 400, 614
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	2 cut(s)	14, 266
HaeII	RGCGCY	2 cut(s)	16, 268
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	293
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	15, 267
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	332, 677
Hin6I	GCGC	2 cut(s)	13, 265
HinP1I	GCGC	2 cut(s)	13, 265
HincII	GTYRAC	2 cut(s)	337, 418
HindII	GTYRAC	2 cut(s)	337, 418
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	7 cut(s)	87, 162, 427, 547, 576, 703, 722
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	157, 476
Hpy166II	GTNNAC	4 cut(s)	61, 337, 418, 737
Hpy188I	TCNGA	4 cut(s)	21, 358, 573, 688
Hpy188III	TCNNGA	3 cut(s)	159, 476, 551
Hpy8I	GTNNAC	4 cut(s)	61, 337, 418, 737
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	3 cut(s)	187, 228, 631
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 262
HpyF3I	CTNAG	3 cut(s)	20, 247, 261
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	332, 677
HspAI	GCGC	2 cut(s)	13, 265
Kzo9I	GATC	3 cut(s)	380, 472, 745
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	3 cut(s)	382, 474, 747
MboI	GATC	3 cut(s)	380, 472, 745
MboII	GAAGA	5 cut(s)	96, 393, 497, 712, 717
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	380
MluCI	AATT	7 cut(s)	306, 503, 558, 591, 680, 689, 695
MlyI	GAGTC	2 cut(s)	156, 697
MmeI	TCCRAC	1 cut(s)	283
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	762
MspI	CCGG	1 cut(s)	293
MunI	CAATTG	1 cut(s)	558
MwoI	GCNNNNNNNGC	2 cut(s)	10, 262
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	3 cut(s)	380, 472, 745
NlaIII	CATG	2 cut(s)	332, 677
NlaIV	GGNNCC	4 cut(s)	345, 625, 715, 758
NspI	RCATGY	1 cut(s)	332
OliI	CACNNNNGTG	1 cut(s)	762
PfeI	GAWTC	5 cut(s)	87, 427, 547, 576, 722
PleI	GAGTC	2 cut(s)	156, 697
PpsI	GAGTC	2 cut(s)	156, 697
PspN4I	GGNNCC	4 cut(s)	345, 625, 715, 758
PspPI	GGNCC	2 cut(s)	224, 457
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	762
SaqAI	TTAA	1 cut(s)	657
Sau3AI	GATC	3 cut(s)	380, 472, 745
Sau96I	GGNCC	2 cut(s)	224, 457
SchI	GAGTC	2 cut(s)	156, 697
SinI	GGWCC	2 cut(s)	224, 457
SmiMI	CAYNNNNRTG	1 cut(s)	762
Sse9I	AATT	7 cut(s)	306, 503, 558, 591, 680, 689, 695
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	2 cut(s)	106, 460
TaaI	ACNGT	3 cut(s)	187, 228, 631
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	4 cut(s)	71, 90, 175, 425
TasI	AATT	7 cut(s)	306, 503, 558, 591, 680, 689, 695
TfiI	GAWTC	5 cut(s)	87, 427, 547, 576, 722
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	2 cut(s)	175, 636
TspDTI	ATGAA	1 cut(s)	603
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	175, 636
VpaK11BI	GGWCC	2 cut(s)	224, 457
XapI	RAATTY	2 cut(s)	503, 591
XbaI	TCTAGA	1 cut(s)	158
XceI	RCATGY	1 cut(s)	332
XmiI	GTMKAC	2 cut(s)	60, 736
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.