Rmu_sc0003207.1_g000003

Receptor protein kinase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003207.1
N/A
Physical Location & Seq
Reverse (-)
3598 .. 4203
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003207.1_g000003.1.cds

Sequence Viewer

Length: 606 bp
atggctgaagaaaactccacgggcaggctggaggaggctcgcccatggcggttgcctggtaagagacggccccaccctaggtcgtactttggtaagcgcgtgtcaaagtgcgtggcagtggagttaaactttagtcttccccattcttgcaaaattgctaagctttatcctggtgactcttccaccctgcaaaagtatctcaaagaaggatcacagactggtaacttcaatcataatctcacttgtggcaacacttttgctgctatatgttacaattgcttatgtagtagaaagaaaaagaaatataagcgtgtcgaaaaagagatcaaggatgaagaatattttgtctcagggatgataaattttgatggaaaagtgatgtatgaggatattgtaagggcaacaaaagattttaattctgcatattgcattgggaagggagggcatgggactttatacaaagcaactttgtcatctggcaacacagtggcagtgaagaaattccatgtgttctcaaatattagtgacaagaattgccggaaggaattcttcaatgaaataagagctctgactgagataagacatcgaaacattgtgaagctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

201

Amino Acids

22.99

Weight (kDa)

9.62

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 217
AcsI RAATTY 3 cut(s) 361, 500, 545
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 24, 78
AgsI TTSAA 2 cut(s) 229, 553
AjnI CCWGG 2 cut(s) 55, 169
AluBI AGCT 3 cut(s) 163, 566, 601
AluI AGCT 3 cut(s) 163, 566, 601
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 58, 352
AlwI GGATC 1 cut(s) 217
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 3 cut(s) 361, 500, 545
Asp700I GAANNNNTTC 2 cut(s) 500, 545
AspA2I CCTAGG 1 cut(s) 77
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 185
AvrII CCTAGG 1 cut(s) 77
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 362
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 57, 171
BcoDI GTCTC 2 cut(s) 58, 352
BfaI CTAG 1 cut(s) 78
BisI GCNGC 1 cut(s) 261
BlnI CCTAGG 1 cut(s) 77
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 57, 171
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 2 cut(s) 57, 171
BpiI GAAGAC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 50
Bpu1102I GCTNAGC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 18, 44, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 78
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 2 cut(s) 57, 171
BseDI CCNNGG 3 cut(s) 18, 44, 77
BseGI GGATG 2 cut(s) 337, 360
BseLI CCNNNNNNNGG 2 cut(s) 24, 78
BseMII CTCAG 2 cut(s) 363, 564
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 1 cut(s) 538
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 2 cut(s) 24, 78
BsmAI GTCTC 2 cut(s) 58, 352
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 2 cut(s) 209, 324
Bsp1720I GCTNAGC 1 cut(s) 159
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 1 cut(s) 49
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 362, 565
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 3 cut(s) 18, 44, 77
BssMI GATC 2 cut(s) 209, 324
BssT1I CCWWGG 2 cut(s) 44, 77
Bst2UI CCWGG 2 cut(s) 57, 171
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 26, 40
BstDEI CTNAG 3 cut(s) 159, 349, 573
BstDSI CCRYGG 2 cut(s) 18, 44
BstF5I GGATG 2 cut(s) 337, 360
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 212, 327
BstMAI GTCTC 2 cut(s) 58, 352
BstMBI GATC 2 cut(s) 209, 324
BstNI CCWGG 2 cut(s) 57, 171
BstSCI CCNGG 2 cut(s) 55, 169
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 70
BtgI CCRYGG 2 cut(s) 18, 44
BtsCI GGATG 2 cut(s) 337, 360
BtsI GCAGTG 2 cut(s) 123, 498
BtsIMutI CAGTG 3 cut(s) 123, 492, 498
Cac8I GCNNGC 2 cut(s) 26, 40
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 3 cut(s) 45, 446, 506
CviJI RGCY 7 cut(s) 5, 28, 38, 70, 163, 566, 601
CviKI_1 RGCY 7 cut(s) 5, 28, 38, 70, 163, 566, 601
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 3 cut(s) 159, 349, 573
DpnI GATC 2 cut(s) 211, 326
DpnII GATC 2 cut(s) 209, 324
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 566
Eco130I CCWWGG 2 cut(s) 44, 77
Eco24I GRGCYC 1 cut(s) 568
Eco53kI GAGCTC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 545
EcoRII CCWGG 2 cut(s) 55, 169
EcoT14I CCWWGG 2 cut(s) 44, 77
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 44, 77
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 3 cut(s) 48, 449, 509
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FaqI GGGAC 1 cut(s) 463
FatI CATG 3 cut(s) 44, 445, 505
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 2 cut(s) 344, 367
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 70
HapII CCGG 1 cut(s) 538
HhaI GCGC 1 cut(s) 99
Hin1II CATG 3 cut(s) 48, 449, 509
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HindIII AAGCTT 2 cut(s) 161, 599
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 538
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 570
HpyAV CCTTC 3 cut(s) 200, 430, 535
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 4 cut(s) 150, 190, 422, 429
HpyF3I CTNAG 3 cut(s) 159, 349, 573
Hsp92II CATG 3 cut(s) 48, 449, 509
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 2 cut(s) 209, 324
Lsp1109I GCAGC 1 cut(s) 247
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 4 cut(s) 173, 221, 269, 524
MalI GATC 2 cut(s) 211, 326
MboI GATC 2 cut(s) 209, 324
MboII GAAGA 6 cut(s) 20, 128, 171, 347, 508, 541
MfeI CAATTG 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 7 cut(s) 153, 274, 361, 415, 500, 532, 545
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 4 cut(s) 25, 28, 379, 434
MroXI GAANNNNTTC 2 cut(s) 500, 545
MseI TTAA 3 cut(s) 125, 414, 604
MspI CCGG 1 cut(s) 538
MspR9I CCNGG 2 cut(s) 57, 171
MunI CAATTG 1 cut(s) 274
MvaI CCWGG 2 cut(s) 57, 171
MvnI CGCG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 44
NdeII GATC 2 cut(s) 209, 324
NlaIII CATG 3 cut(s) 48, 449, 509
NlaIV GGNNCC 1 cut(s) 71
NmuCI GTSAC 2 cut(s) 173, 524
PdmI GAANNNNTTC 2 cut(s) 500, 545
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 568
Psp6I CCWGG 2 cut(s) 55, 169
PspGI CCWGG 2 cut(s) 55, 169
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 69
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SacI GAGCTC 1 cut(s) 568
SaqAI TTAA 3 cut(s) 125, 414, 604
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 2 cut(s) 209, 324
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 57, 171
SduI GDGCHC 1 cut(s) 568
SetI ASST 4 cut(s) 83, 165, 568, 603
Sse9I AATT 7 cut(s) 153, 274, 361, 415, 500, 532, 545
SsiI CCGC 1 cut(s) 49
SspI AATATT 2 cut(s) 341, 520
SspMI CTAG 1 cut(s) 78
SstI GAGCTC 1 cut(s) 568
StyD4I CCNGG 2 cut(s) 55, 169
StyI CCWWGG 2 cut(s) 44, 77
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 2 cut(s) 315, 586
TasI AATT 7 cut(s) 153, 274, 361, 415, 500, 532, 545
Tru1I TTAA 3 cut(s) 125, 414, 604
Tru9I TTAA 3 cut(s) 125, 414, 604
TscAI CASTG 3 cut(s) 123, 492, 498
TseFI GTSAC 2 cut(s) 173, 524
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 2 cut(s) 173, 524
TspDTI ATGAA 2 cut(s) 348, 570
TspRI CASTG 3 cut(s) 123, 492, 498
XapI RAATTY 3 cut(s) 361, 500, 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XmaJI CCTAGG 1 cut(s) 77
XmnI GAANNNNTTC 2 cut(s) 500, 545
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.