Rmu_sc0003221.1_g000058

Polycomb group protein EMBRYONIC FLOWER

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003221.1
N/A
Physical Location & Seq
Forward (+)
261407 .. 264477
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
atggagggcgacaagatgatttttcctgagaagacacggagttggtctttgtctatggccaacctctttctctcctccggcggactttccgacccggccagaagggagaagatgtgccgtcatgatttgtcagcaggcgaggcggtttcaatcgaagagaatctcttgatatattgcaagccggttgagctctacaatattcttcgccctcgtgctttgcataatcctttatttcttcgtagatgtttgcgatacgaaatccaagcaaagcataaacagaggttcaatgctgggactgtaatattcaactataaggactactgcaacactttacaaaaaactgaaggtatcatgtctctcattgtctga

Protein Analysis

122

Amino Acids

14.14

Weight (kDa)

9.16

Isoelectric Point (pI)

67.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 81, 143
AcoI YGGCCR 2 cut(s) 57, 96
AcuI CTGAAG 1 cut(s) 363
AgsI TTSAA 3 cut(s) 150, 286, 307
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 360
AoxI GGCC 2 cut(s) 57, 96
AsuC2I CCSGG 1 cut(s) 95
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 192
BceAI ACGGC 1 cut(s) 102
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse118I RCCGGY 1 cut(s) 181
BseMII CTCAG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 290
BshFI GGCC 2 cut(s) 59, 98
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 3 cut(s) 78, 95, 182
BslFI GGGAC 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 2 cut(s) 59, 98
Bsp1286I GDGCHC 1 cut(s) 192
BspACI CCGC 2 cut(s) 81, 143
BspANI GGCC 2 cut(s) 59, 98
BspCNI CTCAG 1 cut(s) 19
BspHI TCATGA 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 136, 179
BstDEI CTNAG 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 360
BstMWI GCNNNNNNNGC 2 cut(s) 140, 187
BstSCI CCNGG 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 38
BsuRI GGCC 2 cut(s) 59, 98
Cac8I GCNNGC 2 cut(s) 136, 179
CciI TCATGA 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 181
CviAII CATG 2 cut(s) 122, 352
CviJI RGCY 4 cut(s) 59, 98, 181, 190
CviKI_1 RGCY 4 cut(s) 59, 98, 181, 190
DdeI CTNAG 1 cut(s) 27
EaeI YGGCCR 2 cut(s) 57, 96
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 96
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 2 cut(s) 125, 355
FaiI YATR 7 cut(s) 56, 123, 172, 222, 273, 312, 353
FaqI GGGAC 1 cut(s) 307
FatI CATG 2 cut(s) 121, 351
FriOI GRGCYC 1 cut(s) 192
GsaI CCCAGC 1 cut(s) 294
HaeIII GGCC 2 cut(s) 59, 98
HapII CCGG 3 cut(s) 78, 95, 182
Hin1II CATG 2 cut(s) 125, 355
HinfI GANTC 1 cut(s) 160
HpaII CCGG 3 cut(s) 78, 95, 182
Hpy188I TCNGA 2 cut(s) 91, 368
Hpy188III TCNNGA 3 cut(s) 26, 122, 166
HpyAV CCTTC 2 cut(s) 96, 338
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 177, 220, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 187
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 2 cut(s) 125, 355
LpnPI CCDG 7 cut(s) 39, 91, 108, 112, 120, 195, 276
MboII GAAGA 5 cut(s) 43, 121, 167, 194, 227
MhlI GDGCHC 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 5 cut(s) 74, 85, 133, 219, 273
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 3 cut(s) 78, 95, 182
MspR9I CCNGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 140, 187
NciI CCSGG 1 cut(s) 95
NlaIII CATG 2 cut(s) 125, 355
PagI TCATGA 1 cut(s) 121
PfeI GAWTC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 290
SacI GAGCTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 192
SetI ASST 4 cut(s) 66, 192, 284, 349
SsiI CCGC 2 cut(s) 81, 143
SspI AATATT 2 cut(s) 199, 303
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 153
TfiI GAWTC 1 cut(s) 160
TspGWI ACGGA 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.