Rmu_sc0003226.1_g000037

branched-chain-amino-acid transaminase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
N/A
Physical Location & Seq
Reverse (-)
185693 .. 187819
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
atgagatgctccgacggagaaaacttttcacaaggacatctctctccctttggaaagattgagctttgcccatctgctggaatattgaattatggacagggactattcgaaggtcttaaggcgaccagaacagaagatggtcgtattatgctgtttcggccccaagagaatgctctaagaatgaagatggggcagagagaatgtaccacctccagccctccaggaaaaggatcactgtatattaggcctttgctcttggggagtggatctaatctgggcctgggcccgggactggagtacacatacctaatatttgcttctccagttggtaattatcacaaggtggaggagcgtgtgatcccagtggaggatttacttgcagccaatgaagctttctgcacaggaactgccgtggttgtcaaccttattggcgctgtaacttatcaagacaagagggttctatacaaagcaggaggagcgttatgtcagaaactgtatgaaacgctaacaggaatccaaacaggtcgtcttgaggacaagaagggatggaccctagaggtcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

188

Amino Acids

20.47

Weight (kDa)

7.6

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 77
AclWI GGATC 3 cut(s) 238, 274, 352
AdeI CACNNNGTG 1 cut(s) 343
AfaI GTAC 2 cut(s) 205, 299
AfiI CCNNNNNNNGG 5 cut(s) 77, 227, 286, 292, 367
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 2 cut(s) 220, 279
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 2 cut(s) 64, 392
AluI AGCT 2 cut(s) 64, 392
AlwI GGATC 3 cut(s) 238, 274, 352
AlwNI CAGNNNCTG 2 cut(s) 407, 493
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 4 cut(s) 158, 245, 277, 283
ApaI GGGCCC 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 380
ArsI GACNNNNNNTTYG 2 cut(s) 511, 543
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 5 cut(s) 159, 277, 283, 284, 549
AsuC2I CCSGG 2 cut(s) 287, 288
AsuII TTCGAA 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 392
BccI CCATC 4 cut(s) 79, 131, 181, 540
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 2 cut(s) 222, 281
BcnI CCSGG 2 cut(s) 287, 288
BfaI CTAG 1 cut(s) 554
BfoI RGCGCY 1 cut(s) 435
BfrI CTTAAG 1 cut(s) 116
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 4 cut(s) 222, 281, 287, 288
Bme18I GGWCC 1 cut(s) 549
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 5 cut(s) 159, 277, 283, 284, 549
BmiI GGNNCC 3 cut(s) 161, 285, 551
BmrFI CCNGG 4 cut(s) 222, 281, 287, 288
BmrI ACTGGG 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 356
BpmI CTGGAG 4 cut(s) 196, 204, 306, 314
Bpu14I TTCGAA 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 2 cut(s) 287, 288
BsaJI CCNNGG 3 cut(s) 280, 286, 411
Bsc4I CCNNNNNNNGG 5 cut(s) 77, 227, 286, 292, 367
Bse1I ACTGG 3 cut(s) 297, 323, 362
BseBI CCWGG 2 cut(s) 222, 281
BseDI CCNNGG 3 cut(s) 280, 286, 411
BseGI GGATG 1 cut(s) 551
BseLI CCNNNNNNNGG 5 cut(s) 77, 227, 286, 292, 367
BseNI ACTGG 3 cut(s) 297, 323, 362
BseRI GAGGAG 2 cut(s) 362, 489
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 1 cut(s) 392
BsgI GTGCAG 1 cut(s) 382
BshFI GGCC 4 cut(s) 160, 247, 279, 285
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 1 cut(s) 287
BslFI GGGAC 2 cut(s) 114, 303
BslI CCNNNNNNNGG 5 cut(s) 77, 227, 286, 292, 367
BsmFI GGGAC 2 cut(s) 114, 303
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 4 cut(s) 160, 247, 279, 285
BsoBI CYCGRG 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 108
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 3 cut(s) 230, 266, 357
BspANI GGCC 4 cut(s) 160, 247, 279, 285
BspLI GGNNCC 3 cut(s) 161, 285, 551
BspPI GGATC 3 cut(s) 238, 274, 352
BspT104I TTCGAA 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 116
BsrI ACTGG 3 cut(s) 297, 323, 362
BssECI CCNNGG 3 cut(s) 280, 286, 411
BssMI GATC 3 cut(s) 230, 266, 357
Bst2UI CCWGG 2 cut(s) 222, 281
Bst4CI ACNGT 2 cut(s) 237, 495
BstAFI CTTAAG 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 551
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 3 cut(s) 233, 269, 360
BstMBI GATC 3 cut(s) 230, 266, 357
BstMWI GCNNNNNNNGC 3 cut(s) 157, 389, 476
BstNI CCWGG 2 cut(s) 222, 281
BstSCI CCNGG 4 cut(s) 220, 279, 285, 286
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 392
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 4 cut(s) 160, 247, 279, 285
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 551
BtsIMutI CAGTG 2 cut(s) 233, 369
CaiI CAGNNNCTG 2 cut(s) 407, 493
CfoI GCGC 1 cut(s) 434
Cfr13I GGNCC 5 cut(s) 159, 277, 283, 284, 549
Cfr9I CCCGGG 1 cut(s) 286
Csp6I GTAC 2 cut(s) 204, 298
CviJI RGCY 8 cut(s) 64, 160, 216, 247, 279, 285, 383, 392
CviKI_1 RGCY 8 cut(s) 64, 160, 216, 247, 279, 285, 383, 392
CviQI GTAC 2 cut(s) 204, 298
DdeI CTNAG 1 cut(s) 176
DpnI GATC 3 cut(s) 232, 268, 359
DpnII GATC 3 cut(s) 230, 266, 357
DraIII CACNNNGTG 1 cut(s) 343
Eco147I AGGCCT 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 220, 279
EcoT38I GRGCYC 1 cut(s) 287
FaiI YATR 7 cut(s) 93, 149, 240, 304, 463, 484, 498
FaqI GGGAC 2 cut(s) 114, 303
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 558
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 554
GlaI GCGC 1 cut(s) 433
GluI GCNGC 1 cut(s) 381
GsuI CTGGAG 4 cut(s) 196, 204, 306, 314
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 4 cut(s) 160, 247, 279, 285
HapII CCGG 1 cut(s) 287
HhaI GCGC 1 cut(s) 434
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HincII GTYRAC 2 cut(s) 421, 562
HindII GTYRAC 2 cut(s) 421, 562
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 1 cut(s) 513
HpaII CCGG 1 cut(s) 287
Hpy166II GTNNAC 3 cut(s) 300, 421, 562
Hpy188I TCNGA 2 cut(s) 13, 489
Hpy188III TCNNGA 2 cut(s) 446, 530
Hpy8I GTNNAC 3 cut(s) 300, 421, 562
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 104, 535
HpyCH4III ACNGT 2 cut(s) 237, 495
HpyCH4V TGCA 2 cut(s) 380, 399
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 389, 476
HpyF3I CTNAG 1 cut(s) 176
HspAI GCGC 1 cut(s) 432
Kzo9I GATC 3 cut(s) 230, 266, 357
LmnI GCTCC 3 cut(s) 14, 349, 476
Lsp1109I GCAGC 1 cut(s) 392
MaeI CTAG 1 cut(s) 554
MaeIII GTNAC 1 cut(s) 436
MalI GATC 3 cut(s) 232, 268, 359
MboI GATC 3 cut(s) 230, 266, 357
MboII GAAGA 2 cut(s) 146, 196
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 2 cut(s) 88, 331
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 8 cut(s) 220, 228, 340, 361, 447, 467, 526, 550
MseI TTAA 1 cut(s) 117
MspCI CTTAAG 1 cut(s) 116
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 4 cut(s) 222, 281, 287, 288
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 2 cut(s) 222, 281
MwoI GCNNNNNNNGC 3 cut(s) 157, 389, 476
NciI CCSGG 2 cut(s) 287, 288
NdeII GATC 3 cut(s) 230, 266, 357
NlaIV GGNNCC 3 cut(s) 161, 285, 551
NspV TTCGAA 1 cut(s) 108
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 513
PflMI CCANNNNNTGG 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 220, 279
PspGI CCWGG 2 cut(s) 220, 279
PspN4I GGNNCC 3 cut(s) 161, 285, 551
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 5 cut(s) 159, 277, 283, 284, 549
PstNI CAGNNNCTG 2 cut(s) 407, 493
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 2 cut(s) 205, 299
RsaNI GTAC 2 cut(s) 204, 298
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 3 cut(s) 230, 266, 357
Sau96I GGNCC 5 cut(s) 159, 277, 283, 284, 549
ScrFI CCNGG 4 cut(s) 222, 281, 287, 288
SduI GDGCHC 1 cut(s) 287
SetI ASST 9 cut(s) 66, 115, 212, 309, 345, 394, 426, 526, 561
SfuI TTCGAA 1 cut(s) 108
SinI GGWCC 1 cut(s) 549
SmaI CCCGGG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 116, 530
SmoI CTYRAG 2 cut(s) 116, 530
Sse9I AATT 2 cut(s) 88, 331
SseBI AGGCCT 1 cut(s) 247
SspI AATATT 2 cut(s) 84, 312
SspMI CTAG 1 cut(s) 554
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 4 cut(s) 220, 279, 285, 286
TaaI ACNGT 2 cut(s) 237, 495
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 88, 331
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 1 cut(s) 513
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 240, 369
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 197, 402, 513
TspGWI ACGGA 1 cut(s) 30
TspMI CCCGGG 1 cut(s) 286
TspRI CASTG 2 cut(s) 240, 369
Van91I CCANNNNNTGG 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 549
XmaI CCCGGG 1 cut(s) 286
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.