Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003230.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4121 .. 6254

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggacaatgcggacgtcgaagccggcggagacgacgagttccaaggccggaggggccgcaagtatcgcccggtggtcggcgacgacgatcgcgccgtgcttgagatgtcgtccatcgatccttcgtcctcgtcttcttcctctcagcccgctcaccaatcctcgctcaagaacataaaagtgagctctgaggagatccttggctctaacataaaagaagggtcctctgctagtcatgtgcaagccaacggcacccagaaagaatccaaattggaactctttggctttgattctcttgtcaatattcttggtcttaagagtatgacagatgagcaagctgcagcaccatctagtcctagagatggtgaaaatattgctatcacccatggaagaccgaaggatactgccgtcaaatcgggtacattgatgggtgtatttgtcccatgcctgcaaaacatattgggaattatctactacatccgtttttcttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

164

Amino Acids

17.63

Weight (kDa)

5.18

Isoelectric Point (pI)

63.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	251
AccBSI	CCGCTC	1 cut(s)	152
AccII	CGCG	1 cut(s)	93
AciI	CCGC	4 cut(s)	11, 27, 58, 150
AclWI	GGATC	2 cut(s)	113, 190
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	2 cut(s)	77, 362
AflII	CTTAAG	1 cut(s)	314
AluBI	AGCT	2 cut(s)	186, 338
AluI	AGCT	2 cut(s)	186, 338
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	113, 190
AoxI	GGCC	2 cut(s)	46, 55
ApeKI	GCWGC	2 cut(s)	338, 341
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	55, 222
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	146, 373, 377
AvaII	GGWCC	1 cut(s)	222
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	188
BbsI	GAAGAC	2 cut(s)	126, 397
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	325, 353
BccI	CCATC	4 cut(s)	122, 355, 356, 421
BceAI	ACGGC	3 cut(s)	80, 265, 392
BciVI	GTATCC	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	3 cut(s)	231, 351, 357
BfmI	CTRYAG	1 cut(s)	339
BfrI	CTTAAG	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	394
BglI	GCCNNNNNGGC	1 cut(s)	54
BisI	GCNGC	3 cut(s)	58, 339, 342
BlsI	GCNGC	3 cut(s)	59, 340, 343
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	55, 222
BmiI	GGNNCC	3 cut(s)	56, 223, 253
BmrFI	CCNGG	1 cut(s)	71
BpiI	GAAGAC	2 cut(s)	126, 397
BpuEI	CTTGAG	2 cut(s)	122, 152
BpuMI	CCSGG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	43, 199, 385
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 362
Bse118I	RCCGGY	1 cut(s)	23
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	43, 199, 385
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	77, 362
BseMII	CTCAG	2 cut(s)	158, 180
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	325, 353
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	48, 57
BshNI	GGYRCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	24, 49, 71
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	77, 362
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	48, 57
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	88, 118, 195
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	4 cut(s)	11, 27, 58, 150
BspANI	GGCC	2 cut(s)	48, 57
BspCNI	CTCAG	2 cut(s)	157, 181
BspDI	ATCGAT	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	3 cut(s)	56, 223, 253
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	2 cut(s)	113, 190
BspT107I	GGYRCC	1 cut(s)	251
BspTI	CTTAAG	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	43, 199, 385
BssMI	GATC	3 cut(s)	88, 118, 195
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	3 cut(s)	43, 199, 385
BstACI	GRCGYC	1 cut(s)	15
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	5 cut(s)	25, 150, 243, 336, 449
BstDEI	CTNAG	2 cut(s)	144, 189
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	477
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	3 cut(s)	91, 121, 198
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	3 cut(s)	88, 118, 195
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 66
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	325, 353
BstV2I	GAAGAC	2 cut(s)	126, 397
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	48, 57
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	477
Cac8I	GCNNGC	5 cut(s)	25, 150, 243, 336, 449
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	55, 222
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	420
CviAII	CATG	3 cut(s)	236, 386, 444
CviJI	RGCY	9 cut(s)	23, 48, 57, 148, 186, 204, 245, 285, 338
CviKI_1	RGCY	9 cut(s)	23, 48, 57, 148, 186, 204, 245, 285, 338
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	2 cut(s)	144, 189
DpnI	GATC	3 cut(s)	90, 120, 197
DpnII	GATC	3 cut(s)	88, 118, 195
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	3 cut(s)	43, 199, 385
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	222
EcoT14I	CCWWGG	3 cut(s)	43, 199, 385
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	3 cut(s)	43, 199, 385
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	3 cut(s)	239, 389, 447
FaiI	YATR	7 cut(s)	176, 212, 237, 323, 387, 445, 458
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	3 cut(s)	235, 385, 443
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	58, 339, 342
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	3 cut(s)	58, 339, 342
FspBI	CTAG	3 cut(s)	231, 351, 357
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	3 cut(s)	58, 339, 342
HaeIII	GGCC	2 cut(s)	48, 57
HapII	CCGG	3 cut(s)	24, 49, 71
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	239, 389, 447
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	2 cut(s)	263, 290
HpaII	CCGG	3 cut(s)	24, 49, 71
HphI	GGTGA	3 cut(s)	146, 373, 377
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	169
Hpy99I	CGWCG	4 cut(s)	20, 38, 86, 89
HpyAV	CCTTC	3 cut(s)	132, 212, 391
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	241, 341, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 66
HpyF3I	CTNAG	2 cut(s)	144, 189
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	239, 389, 447
HspAI	GCGC	1 cut(s)	93
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	88, 118, 195
LpnPI	CCDG	5 cut(s)	37, 62, 84, 269, 461
Lsp1109I	GCAGC	2 cut(s)	325, 353
MaeI	CTAG	3 cut(s)	231, 351, 357
MaeII	ACGT	1 cut(s)	15
MalI	GATC	3 cut(s)	90, 120, 197
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	3 cut(s)	88, 118, 195
MboII	GAAGA	3 cut(s)	126, 129, 402
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	2 cut(s)	269, 465
MnlI	CCTC	6 cut(s)	45, 139, 151, 172, 184, 235
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	3 cut(s)	24, 49, 71
MspR9I	CCNGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	54, 66
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	3 cut(s)	88, 118, 195
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	3 cut(s)	239, 389, 447
NlaIV	GGNNCC	3 cut(s)	56, 223, 253
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 93
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	263, 290
PkrI	GCNGC	3 cut(s)	59, 340, 343
Ple19I	CGATCG	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	56, 223, 253
PspPI	GGNCC	2 cut(s)	55, 222
PspPPI	RGGWCCY	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	195
PvuI	CGATCG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	58, 339, 342
Sau3AI	GATC	3 cut(s)	88, 118, 195
Sau96I	GGNCC	2 cut(s)	55, 222
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	3 cut(s)	18, 188, 340
SfcI	CTRYAG	1 cut(s)	339
SfiI	GGCCNNNNNGGCC	1 cut(s)	54
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	3 cut(s)	101, 167, 314
SmoI	CTYRAG	3 cut(s)	101, 167, 314
Sse9I	AATT	2 cut(s)	269, 465
SsiI	CCGC	4 cut(s)	11, 27, 58, 150
SspI	AATATT	2 cut(s)	304, 373
SspMI	CTAG	3 cut(s)	231, 351, 357
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	3 cut(s)	43, 199, 385
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	18, 117
TaqII	GACCGA	1 cut(s)	409
TasI	AATT	2 cut(s)	269, 465
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	263, 290
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	2 cut(s)	338, 341
TspGWI	ACGGA	1 cut(s)	470
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	222
XspI	CTAG	3 cut(s)	231, 351, 357
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.