Rmu_sc0003230.1_g000007

Alpha-galactosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003230.1
N/A
Physical Location & Seq
Forward (+)
37120 .. 38496
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
atgggtgtttacgcttcaccgataacaagaatgatggtggcagataccaaagagcaacagagacgaaatctgcttgctaatgggcttggagtgactcctcccatggggtggaatagttggaatcacttcaactgcaaaattgatgagaaaatcatcaaagcaactgctgatgctctgatttccactggtctctctaaacttggatatacctatgttaacatagatgattgttgggcagaagtagctcgtgatgacaagggtaatctagtgcccaagaaatccacatttccatctggcatcaaagctcttgcggattatgtgcacagcaagggattaaagctaggaatctactcagatgcagggtatcatgactcttacacactcatacaaatatatgcagcacaattgtggtggaatgatgatagatag

Protein Analysis

142

Amino Acids

15.89

Weight (kDa)

7.74

Isoelectric Point (pI)

23.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Melibiase_2 PF16499 32 - 123 2e-29 Alpha galactosidase A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 108
AciI CCGC 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 104, 108
AgsI TTSAA 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 406
AluBI AGCT 3 cut(s) 245, 305, 340
AluI AGCT 3 cut(s) 245, 305, 340
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 55, 194
Alw44I GTGCAC 1 cut(s) 320
ApaLI GTGCAC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 398
Asp700I GAANNNNTTC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 9
BaeGI GKGCMC 2 cut(s) 273, 324
BauI CACGAG 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 410
BccI CCATC 2 cut(s) 28, 298
BcoDI GTCTC 2 cut(s) 55, 194
BfaI CTAG 2 cut(s) 266, 341
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BmsI GCATC 3 cut(s) 160, 306, 346
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 108
Bse1I ACTGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 104, 108
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 87
BseSI GKGCMC 2 cut(s) 273, 324
BseXI GCAGC 1 cut(s) 410
BsiHKAI GWGCWC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 104, 108
BsmAI GTCTC 2 cut(s) 55, 194
BsmBI CGTCTC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 2 cut(s) 273, 324
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 367
BspTNI GGTCTC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 102
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 352
BstDSI CCRYGG 1 cut(s) 102
BstMAI GTCTC 2 cut(s) 55, 194
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSLI GKGCMC 2 cut(s) 273, 324
BstV1I GCAGC 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 75
CciI TCATGA 1 cut(s) 367
CspCI CAANNNNNGTGG 2 cut(s) 392, 427
CviAII CATG 2 cut(s) 103, 368
CviJI RGCY 4 cut(s) 85, 245, 305, 340
CviKI_1 RGCY 4 cut(s) 85, 245, 305, 340
DdeI CTNAG 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 2 cut(s) 106, 371
FaiI YATR 9 cut(s) 104, 207, 213, 221, 318, 369, 386, 394, 396
FatI CATG 2 cut(s) 102, 367
Fnu4HI GCNGC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 2 cut(s) 266, 341
GluI GCNGC 1 cut(s) 399
Hin1II CATG 2 cut(s) 106, 371
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 4 cut(s) 94, 121, 345, 371
HpaI GTTAAC 1 cut(s) 217
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 3 cut(s) 10, 217, 322
Hpy188I TCNGA 2 cut(s) 177, 355
Hpy188III TCNNGA 2 cut(s) 248, 368
Hpy8I GTNNAC 3 cut(s) 10, 217, 322
HpyCH4V TGCA 4 cut(s) 135, 322, 359, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 352
Hsp92II CATG 2 cut(s) 106, 371
KspAI GTTAAC 1 cut(s) 217
LpnPI CCDG 3 cut(s) 171, 279, 345
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 3 cut(s) 160, 306, 346
MaeI CTAG 2 cut(s) 266, 341
MaeIII GTNAC 1 cut(s) 91
MfeI CAATTG 1 cut(s) 404
MhlI GDGCHC 2 cut(s) 273, 324
MluCI AATT 2 cut(s) 138, 404
MlyI GAGTC 2 cut(s) 88, 365
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 2 cut(s) 216, 335
MslI CAYNNNNRTG 1 cut(s) 406
MunI CAATTG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 102
NlaIII CATG 2 cut(s) 106, 371
NmuCI GTSAC 1 cut(s) 91
OliI CACNNNNGTG 1 cut(s) 406
PagI TCATGA 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 2 cut(s) 121, 345
PflMI CCANNNNNTGG 1 cut(s) 108
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 2 cut(s) 88, 365
PpsI GAGTC 2 cut(s) 88, 365
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 2 cut(s) 216, 335
SatI GCNGC 1 cut(s) 399
SchI GAGTC 2 cut(s) 88, 365
SduI GDGCHC 2 cut(s) 273, 324
SetI ASST 4 cut(s) 212, 247, 307, 342
SfaNI GCATC 3 cut(s) 160, 306, 346
SmiMI CAYNNNNRTG 1 cut(s) 406
Sse9I AATT 2 cut(s) 138, 404
SsiI CCGC 1 cut(s) 311
SspMI CTAG 2 cut(s) 266, 341
StyI CCWWGG 1 cut(s) 102
TasI AATT 2 cut(s) 138, 404
TfiI GAWTC 2 cut(s) 121, 345
Tru1I TTAA 2 cut(s) 216, 335
Tru9I TTAA 2 cut(s) 216, 335
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 91
TspRI CASTG 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 108
VneI GTGCAC 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 2 cut(s) 266, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.