Rmu_sc0003238.1_g000017

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003238.1
N/A
Physical Location & Seq
Forward (+)
109864 .. 110205
342 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
atgcaaaatcgcgccaaggctatgattttcttgtgtcatcatattgacaagagcctaaaagataagtaccttacggtgaaagacccgtttaagctttttcaagcattgctcactaatactattgttctacctagagcacgatatgaatggatgcatttgtgccttcaagatttcagctctgtcattgattttaattccgctgtgcatcggattaactcccaactaaaattatgtggagagtctgtcagtgaagataacaagctcaacgtctctgatttttctatggacaatggaaaacatgttgatgacataatcagcggcggtgttcttgacaccgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.9

Weight (kDa)

6.17

Isoelectric Point (pI)

24.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 12
AciI CCGC 3 cut(s) 198, 318, 321
AfaI GTAC 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 2 cut(s) 101, 167
AluBI AGCT 3 cut(s) 94, 177, 262
AluI AGCT 3 cut(s) 94, 177, 262
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 274
AspLEI GCGC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 132
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
BmsI GCATC 2 cut(s) 141, 214
BsaJI CCNNGG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bse3DI GCAATG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 139
BspACI CCGC 3 cut(s) 198, 318, 321
BspFNI CGCG 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 76
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 302
BstUI CGCG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 253
CfoI GCGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 299
CviJI RGCY 5 cut(s) 20, 54, 94, 177, 262
CviKI_1 RGCY 5 cut(s) 20, 54, 94, 177, 262
CviQI GTAC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 15
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 1 cut(s) 302
FaiI YATR 7 cut(s) 23, 42, 144, 232, 284, 300, 311
FatI CATG 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 319
FspBI CTAG 1 cut(s) 132
GlaI GCGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 14
Hin1II CATG 1 cut(s) 302
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 239
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 210, 274
Hpy188III TCNNGA 2 cut(s) 167, 329
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 4, 154, 205
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 1 cut(s) 302
HspAI GCGC 1 cut(s) 12
LweI GCATC 2 cut(s) 141, 214
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 267
MboII GAAGA 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 2 cut(s) 193, 227
MlyI GAGTC 1 cut(s) 248
Mph1103I ATGCAT 1 cut(s) 156
MseI TTAA 4 cut(s) 90, 192, 213, 340
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 2 cut(s) 200, 318
MvnI CGCG 1 cut(s) 12
NlaIII CATG 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 156
NspI RCATGY 1 cut(s) 302
PciI ACATGT 1 cut(s) 298
PkrI GCNGC 1 cut(s) 320
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PscI ACATGT 1 cut(s) 298
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 4 cut(s) 90, 192, 213, 340
SatI GCNGC 1 cut(s) 319
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 139
SetI ASST 6 cut(s) 72, 96, 133, 179, 264, 270
SfaNI GCATC 2 cut(s) 141, 214
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 2 cut(s) 193, 227
SsiI CCGC 3 cut(s) 198, 318, 321
SspMI CTAG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 270
TasI AATT 2 cut(s) 193, 227
TauI GCSGC 1 cut(s) 321
Tru1I TTAA 4 cut(s) 90, 192, 213, 340
Tru9I TTAA 4 cut(s) 90, 192, 213, 340
TscAI CASTG 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 253
XceI RCATGY 1 cut(s) 302
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.