Rmu_sc0003249.1_g000005

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003249.1
N/A
Physical Location & Seq
Forward (+)
16443 .. 16742
300 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
atgctgtttatcacccgtggcaatatagtgacttacaccacccctgccgttgtaagatttcttacaaatggtgactgctacggtgaagaacttcttgattggatactgcattcctatggtcaaaacaattgggggctgatgtctaccaacatatccaacttccccttgtcaaccaaaactgtcaaagctcaaactgaagttgaagtctttgttctaagggtccaacagtcaaagcttatagtgaaggatttctggctccattttagtagggagatagatctaaagccttgggctgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

11.45

Weight (kDa)

6.71

Isoelectric Point (pI)

25.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 216
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 2 cut(s) 188, 235
AluI AGCT 2 cut(s) 188, 235
ApeKI GCWGC 1 cut(s) 293
Asp700I GAANNNNTTC 2 cut(s) 90, 248
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 4, 83, 95
AvaII GGWCC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 32
BciVI GTATCC 1 cut(s) 96
BfuI GTATCC 1 cut(s) 96
BglII AGATCT 1 cut(s) 277
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 221, 257
BsaJI CCNNGG 2 cut(s) 16, 287
BseDI CCNNGG 2 cut(s) 16, 287
BseXI GCAGC 1 cut(s) 280
BsmI GAATGC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 221, 257
BssECI CCNNGG 2 cut(s) 16, 287
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 287
Bst4CI ACNGT 3 cut(s) 83, 181, 228
BstDEI CTNAG 1 cut(s) 215
BstDSI CCRYGG 1 cut(s) 16
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuI GTATCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 220
CviJI RGCY 6 cut(s) 136, 188, 235, 256, 286, 293
CviKI_1 RGCY 6 cut(s) 136, 188, 235, 256, 286, 293
DdeI CTNAG 1 cut(s) 215
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaiI YATR 5 cut(s) 26, 117, 152, 239, 298
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 233
HphI GGTGA 3 cut(s) 4, 83, 95
Hpy166II GTNNAC 2 cut(s) 144, 171
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 144, 171
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 3 cut(s) 83, 181, 228
HpyCH4V TGCA 2 cut(s) 109, 296
HpyF3I CTNAG 1 cut(s) 215
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 2 cut(s) 57, 238
Lsp1109I GCAGC 1 cut(s) 280
MaeIII GTNAC 2 cut(s) 28, 71
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 1 cut(s) 98
MfeI CAATTG 1 cut(s) 127
MflI RGATCY 1 cut(s) 277
MluCI AATT 1 cut(s) 127
MmeI TCCRAC 2 cut(s) 180, 247
MroXI GAANNNNTTC 2 cut(s) 90, 248
MslI CAYNNNNRTG 1 cut(s) 114
MunI CAATTG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 109
NdeII GATC 1 cut(s) 277
NlaIV GGNNCC 2 cut(s) 221, 257
NmuCI GTSAC 2 cut(s) 28, 71
PctI GAATGC 1 cut(s) 109
PdmI GAANNNNTTC 2 cut(s) 90, 248
PkrI GCNGC 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 221, 257
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 114
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 220
SetI ASST 2 cut(s) 190, 237
SgeI CNNG 6 cut(s) 27, 29, 56, 107, 178, 265
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 114
Sse9I AATT 1 cut(s) 127
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 3 cut(s) 83, 181, 228
TasI AATT 1 cut(s) 127
TseFI GTSAC 2 cut(s) 28, 71
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 2 cut(s) 28, 71
VpaK11BI GGWCC 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 143
XmnI GAANNNNTTC 2 cut(s) 90, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.