Rmu_sc0003249.1_g000018

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003249.1
OG0018620
Physical Location & Seq
Reverse (-)
72514 .. 73968
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1455 bp
atgcagaaaattcggaaaggtaacgatagtattgacaagtatatggaacgttttaaaactgttcgggaccaactctctgcttctggagttttcattcctgatgaccatatagtgtttctgatcctaaatggattgcatgttgactttgcagccattaagactgtcatcagagttcgaacaacgccaatatctctaagcgagcttcgcacaatgttattggatgttgagtccgatatagttcaagaatcaagatcatttgctgctacttccatgctccaacacaaagcactgccatcgtcttctcttacagctatgattgcacaaaatattcttgccaattcatctcaaagtatgcaatacgggataccaagtacagggccatcatctcaagcaatctttccatcccattatgctggatattcttcaatgacacattctctacaaactgctgcatcaaatgttggtttcttgcctaatgatactaatctgattccaggtatactttcttataaccattacaatacatcatctcgtgcctccaatgttcatcattataatgctacaccacctagctctactacacattttgggataccacataatagcatgatatcgagttcagctcttagtatgcctaatgctcctccaaattgtcaagtcctactcccattcactaccaatgttggtgttccgcagtcagtgcctaattctagatatatgctgcataataatgttggaaatgaaaattgcttttcatcatctgctccctcttatggttatgcacctcaaaatggttctagcacttcatatgttcaacaattcaatcttaatcacagtggagctcaaaaacatggaaacttctctcaacaaaatgtgcaacctggtacattcaacaatagttctcagcaaaataatggcttttctcgtagggagaaagtttcttcacaggccatgccttgctctgcatcattgtctgctctcagaaatgcagcctctgtgtcttctgcaaacaaaatttccacacctgcccaggctcaagatggcaataactcttatgtcactactgaacttcaaggaaatgagaatttgaaaactgatgtcgaaaagatagttcaagataattttgtttgtgaaactgatatggatgttggggctgttgctgaaaatttcagtaagagttgtccagaagttgttaagggtgttgatggggatgacagcaagaaggaggacataagaacggacaaaatatatgtgtatagcaggtctatgaacaaagtagataccaaggaagctgctgagggtagtttgcagcatgctctcaagaaaatggaagctttgccaacaccaggaacttggctccttccttccattccggacagaaatctattgaattgtagacaagcttgtgagtctacgaatttatggcgattacttcctctcattcctcctggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

484

Amino Acids

52.63

Weight (kDa)

6.92

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 6 - 79 1.5e-06 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 510, 555
AarI CACCTGC 1 cut(s) 1033
Acc36I ACCTGC 2 cut(s) 1033, 1251
AccI GTMKAC 3 cut(s) 499, 1396, 1412
AccIII TCCGGA 1 cut(s) 1372
AciI CCGC 1 cut(s) 692
AclI AACGTT 1 cut(s) 49
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 5 cut(s) 9, 1014, 1084, 1165, 1417
AfaI GTAC 2 cut(s) 373, 886
AfiI CCNNNNNNNGG 4 cut(s) 374, 773, 791, 1346
AgsI TTSAA 9 cut(s) 242, 426, 815, 823, 892, 1073, 1090, 1115, 1390
AjnI CCWGG 5 cut(s) 493, 880, 1029, 1345, 1447
AluBI AGCT 8 cut(s) 202, 311, 573, 623, 842, 1292, 1334, 1403
AluI AGCT 8 cut(s) 202, 311, 573, 623, 842, 1292, 1334, 1403
Alw21I GWGCWC 1 cut(s) 844
AlwI GGATC 1 cut(s) 115
AlwNI CAGNNNCTG 1 cut(s) 995
Aor13HI TCCGGA 1 cut(s) 1372
AoxI GGCC 2 cut(s) 377, 948
ApeKI GCWGC 7 cut(s) 149, 260, 449, 721, 989, 1292, 1309
ApoI RAATTY 5 cut(s) 9, 1014, 1084, 1165, 1417
AspS9I GGNCC 2 cut(s) 67, 377
AsuII TTCGAA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 844
BauI CACGAG 1 cut(s) 531
BbsI GAAGAC 2 cut(s) 291, 993
Bbv12I GWGCWC 1 cut(s) 844
BbvCI CCTCAGC 1 cut(s) 1296
BbvI GCAGC 7 cut(s) 161, 247, 436, 708, 1001, 1279, 1321
BccI CCATC 5 cut(s) 301, 388, 409, 1034, 1199
BcgI CGANNNNNNTGC 3 cut(s) 27, 276, 310
BciT130I CCWGG 5 cut(s) 495, 882, 1031, 1347, 1449
BciVI GTATCC 2 cut(s) 357, 585
BfaI CTAG 3 cut(s) 570, 711, 798
BfuAI ACCTGC 2 cut(s) 1033, 1251
BfuI GTATCC 2 cut(s) 357, 585
BisI GCNGC 7 cut(s) 150, 261, 450, 722, 990, 1293, 1310
BlsI GCNGC 7 cut(s) 151, 262, 451, 723, 991, 1294, 1311
Bme1390I CCNGG 5 cut(s) 495, 882, 1031, 1347, 1449
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 67, 377
BmiI GGNNCC 2 cut(s) 68, 1358
BmrFI CCNGG 5 cut(s) 495, 882, 1031, 1347, 1449
BmsI GCATC 2 cut(s) 461, 974
BpiI GAAGAC 2 cut(s) 291, 993
BplI GAGNNNNNCTC 2 cut(s) 607, 639
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 1296
Bpu14I TTCGAA 1 cut(s) 175
BpuEI CTTGAG 3 cut(s) 372, 1020, 1304
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 1029, 1284
BsaWI WCCGGW 1 cut(s) 1372
Bsc4I CCNNNNNNNGG 4 cut(s) 374, 773, 791, 1346
Bse8I GATNNNNATC 1 cut(s) 483
BseAI TCCGGA 1 cut(s) 1372
BseBI CCWGG 5 cut(s) 495, 882, 1031, 1347, 1449
BseDI CCNNGG 2 cut(s) 1029, 1284
BseGI GGATG 4 cut(s) 226, 401, 1150, 1216
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 4 cut(s) 374, 773, 791, 1346
BseMII CTCAG 3 cut(s) 917, 994, 1287
BseRI GAGGAG 1 cut(s) 633
BseXI GCAGC 7 cut(s) 161, 247, 436, 708, 1001, 1279, 1321
BshFI GGCC 2 cut(s) 379, 950
BsiHKAI GWGCWC 1 cut(s) 844
BsiSI CCGG 1 cut(s) 1373
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 4 cut(s) 374, 773, 791, 1346
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 379, 950
Bsp119I TTCGAA 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 844
Bsp13I TCCGGA 1 cut(s) 1372
Bsp143I GATC 2 cut(s) 120, 251
BspACI CCGC 1 cut(s) 692
BspANI GGCC 2 cut(s) 379, 950
BspCNI CTCAG 3 cut(s) 916, 993, 1288
BspEI TCCGGA 1 cut(s) 1372
BspLI GGNNCC 2 cut(s) 68, 1358
BspMI ACCTGC 2 cut(s) 1033, 1251
BspPI GGATC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 1029, 1284
BssMI GATC 2 cut(s) 120, 251
BssNAI GTATAC 1 cut(s) 500
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 1284
Bst1107I GTATAC 1 cut(s) 500
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 5 cut(s) 495, 882, 1031, 1347, 1449
Bst4CI ACNGT 3 cut(s) 61, 163, 836
BstAPI GCANNNNNTGC 1 cut(s) 700
BstBI TTCGAA 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 200, 1314
BstDEI CTNAG 5 cut(s) 194, 626, 903, 980, 1296
BstF5I GGATG 4 cut(s) 226, 401, 1150, 1216
BstKTI GATC 2 cut(s) 123, 254
BstMBI GATC 2 cut(s) 120, 251
BstMWI GCNNNNNNNGC 3 cut(s) 204, 317, 700
BstNI CCWGG 5 cut(s) 495, 882, 1031, 1347, 1449
BstNSI RCATGY 2 cut(s) 140, 1316
BstSCI CCNGG 5 cut(s) 493, 880, 1029, 1345, 1447
BstV1I GCAGC 7 cut(s) 161, 247, 436, 708, 1001, 1279, 1321
BstV2I GAAGAC 2 cut(s) 291, 993
BstXI CCANNNNNNTGG 2 cut(s) 413, 1353
BstZ17I GTATAC 1 cut(s) 500
BsuI GTATCC 2 cut(s) 357, 585
BsuRI GGCC 2 cut(s) 379, 950
BtsCI GGATG 4 cut(s) 226, 401, 1150, 1216
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 3 cut(s) 287, 705, 841
BveI ACCTGC 2 cut(s) 1033, 1251
Cac8I GCNNGC 2 cut(s) 200, 1314
CaiI CAGNNNCTG 1 cut(s) 995
Cfr13I GGNCC 2 cut(s) 67, 377
CsiI ACCWGGT 1 cut(s) 880
Csp6I GTAC 2 cut(s) 372, 885
CviAII CATG 6 cut(s) 137, 271, 607, 851, 952, 1313
CviQI GTAC 2 cut(s) 372, 885
DdeI CTNAG 5 cut(s) 194, 626, 903, 980, 1296
DpnI GATC 2 cut(s) 122, 253
DpnII GATC 2 cut(s) 120, 251
DraI TTTAAA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 842
Eco130I CCWWGG 1 cut(s) 1284
Eco24I GRGCYC 1 cut(s) 844
Eco32I GATATC 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 842
EcoICRI GAGCTC 1 cut(s) 842
EcoRII CCWGG 5 cut(s) 493, 880, 1029, 1345, 1447
EcoRV GATATC 1 cut(s) 612
EcoT14I CCWWGG 1 cut(s) 1284
EcoT38I GRGCYC 1 cut(s) 844
ErhI CCWWGG 1 cut(s) 1284
FaeI CATG 6 cut(s) 140, 274, 610, 854, 955, 1316
FaqI GGGAC 1 cut(s) 80
FatI CATG 6 cut(s) 136, 270, 606, 850, 951, 1312
FauNDI CATATG 1 cut(s) 808
FblI GTMKAC 3 cut(s) 499, 1396, 1412
Fnu4HI GCNGC 7 cut(s) 150, 261, 450, 722, 990, 1293, 1310
FokI GGATG 4 cut(s) 233, 388, 1157, 1223
FriOI GRGCYC 1 cut(s) 844
Fsp4HI GCNGC 7 cut(s) 150, 261, 450, 722, 990, 1293, 1310
FspBI CTAG 3 cut(s) 570, 711, 798
GluI GCNGC 7 cut(s) 150, 261, 450, 722, 990, 1293, 1310
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 2 cut(s) 379, 950
HapII CCGG 1 cut(s) 1373
Hin1II CATG 6 cut(s) 140, 274, 610, 854, 955, 1316
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 2 cut(s) 1332, 1401
HinfI GANTC 4 cut(s) 227, 245, 490, 1409
HpaII CCGG 1 cut(s) 1373
Hpy166II GTNNAC 4 cut(s) 142, 500, 1397, 1413
Hpy188I TCNGA 6 cut(s) 15, 120, 170, 232, 489, 983
Hpy8I GTNNAC 4 cut(s) 142, 500, 1397, 1413
HpyAV CCTTC 3 cut(s) 1216, 1370, 1374
HpyCH4III ACNGT 3 cut(s) 61, 163, 836
HpyCH4IV ACGT 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 317, 700
HpyF3I CTNAG 5 cut(s) 194, 626, 903, 980, 1296
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 6 cut(s) 140, 274, 610, 854, 955, 1316
Kpn2I TCCGGA 1 cut(s) 1372
Kzo9I GATC 2 cut(s) 120, 251
LmnI GCTCC 5 cut(s) 279, 646, 769, 839, 1362
Lsp1109I GCAGC 7 cut(s) 161, 247, 436, 708, 1001, 1279, 1321
LweI GCATC 2 cut(s) 461, 974
MabI ACCWGGT 1 cut(s) 880
MaeI CTAG 3 cut(s) 570, 711, 798
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 20, 1057
MalI GATC 2 cut(s) 122, 253
MboI GATC 2 cut(s) 120, 251
MboII GAAGA 4 cut(s) 291, 414, 933, 993
MhlI GDGCHC 1 cut(s) 844
MlyI GAGTC 2 cut(s) 236, 1418
MmeI TCCRAC 2 cut(s) 301, 715
MnlI CCTC 9 cut(s) 547, 654, 778, 795, 1003, 1219, 1291, 1446, 1455
MroI TCCGGA 1 cut(s) 1372
MseI TTAA 4 cut(s) 54, 156, 828, 1194
MslI CAYNNNNRTG 2 cut(s) 555, 729
MspI CCGG 1 cut(s) 1373
MspR9I CCNGG 5 cut(s) 495, 882, 1031, 1347, 1449
MvaI CCWGG 5 cut(s) 495, 882, 1031, 1347, 1449
MwoI GCNNNNNNNGC 3 cut(s) 204, 317, 700
NdeI CATATG 1 cut(s) 808
NdeII GATC 2 cut(s) 120, 251
NlaIII CATG 6 cut(s) 140, 274, 610, 854, 955, 1316
NlaIV GGNNCC 2 cut(s) 68, 1358
NmuCI GTSAC 1 cut(s) 1057
NspI RCATGY 2 cut(s) 140, 1316
NspV TTCGAA 1 cut(s) 175
PaeI GCATGC 1 cut(s) 1316
PaqCI CACCTGC 1 cut(s) 1033
PfeI GAWTC 2 cut(s) 245, 490
PkrI GCNGC 7 cut(s) 151, 262, 451, 723, 991, 1294, 1311
PleI GAGTC 2 cut(s) 235, 1417
PpsI GAGTC 2 cut(s) 235, 1417
PsiI TTATAA 2 cut(s) 510, 555
Psp124BI GAGCTC 1 cut(s) 844
Psp1406I AACGTT 1 cut(s) 49
Psp6I CCWGG 5 cut(s) 493, 880, 1029, 1345, 1447
PspGI CCWGG 5 cut(s) 493, 880, 1029, 1345, 1447
PspN4I GGNNCC 2 cut(s) 68, 1358
PspPI GGNCC 2 cut(s) 67, 377
PstNI CAGNNNCTG 1 cut(s) 995
RsaI GTAC 2 cut(s) 373, 886
RsaNI GTAC 2 cut(s) 372, 885
RseI CAYNNNNRTG 2 cut(s) 555, 729
SacI GAGCTC 1 cut(s) 844
SaqAI TTAA 4 cut(s) 54, 156, 828, 1194
SatI GCNGC 7 cut(s) 150, 261, 450, 722, 990, 1293, 1310
Sau3AI GATC 2 cut(s) 120, 251
Sau96I GGNCC 2 cut(s) 67, 377
SchI GAGTC 2 cut(s) 236, 1418
ScrFI CCNGG 5 cut(s) 495, 882, 1031, 1347, 1449
SduI GDGCHC 1 cut(s) 844
SexAI ACCWGGT 1 cut(s) 880
SfaNI GCATC 2 cut(s) 461, 974
SfuI TTCGAA 1 cut(s) 175
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 2 cut(s) 555, 729
SmlI CTYRAG 3 cut(s) 387, 1035, 1319
SmoI CTYRAG 3 cut(s) 387, 1035, 1319
SphI GCATGC 1 cut(s) 1316
SsiI CCGC 1 cut(s) 692
SspI AATATT 1 cut(s) 328
SspMI CTAG 3 cut(s) 570, 711, 798
SstI GAGCTC 1 cut(s) 844
StyD4I CCNGG 5 cut(s) 493, 880, 1029, 1345, 1447
StyI CCWWGG 1 cut(s) 1284
TaaI ACNGT 3 cut(s) 61, 163, 836
TaiI ACGT 1 cut(s) 52
TaqI TCGA 3 cut(s) 175, 614, 1101
TatI WGTACW 1 cut(s) 371
TfiI GAWTC 2 cut(s) 245, 490
Tru1I TTAA 4 cut(s) 54, 156, 828, 1194
Tru9I TTAA 4 cut(s) 54, 156, 828, 1194
TscAI CASTG 3 cut(s) 294, 705, 841
TseFI GTSAC 1 cut(s) 1057
TseI GCWGC 7 cut(s) 149, 260, 449, 721, 989, 1292, 1309
Tsp45I GTSAC 1 cut(s) 1057
TspDTI ATGAA 7 cut(s) 82, 330, 536, 744, 756, 795, 1283
TspGWI ACGGA 1 cut(s) 1253
TspRI CASTG 3 cut(s) 294, 705, 841
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 5 cut(s) 9, 1014, 1084, 1165, 1417
XbaI TCTAGA 1 cut(s) 710
XceI RCATGY 2 cut(s) 140, 1316
XcmI CCANNNNNNNNNTGG 1 cut(s) 1037
XmiI GTMKAC 3 cut(s) 499, 1396, 1412
XspI CTAG 3 cut(s) 570, 711, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.