Rmu_sc0003249.1_g000031

negative regulation of oxidative stress-induced neuron death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003249.1
N/A
Physical Location & Seq
Reverse (-)
121986 .. 122632
647 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
atggcctccatagatgctgtcacagcaagttttgctgcttctcttgccctcgttgcgggtggtagtgccccagatctgggcaagattgttggtggtccgatgcgtaagtcatctcaattttttctacttggaaaactgctgacccgcaagccggtggatcccaaagttttcaaggctcacttccatcgtacctggatggtggataaggattttagggttcatgaaaaggctggagatgtgttcatgttctcctttgaatcagttcgtgatcgtaacaagatacttcgggaagggtcgaggtctggctcacttcaccacagccgaggcacgactcacttcaccttagccgaggtccggctcacttcatcacctcagccgaggtccggctcacttcatcacctcagccgaggccctgctcagctcacctcagccgaggcccggcttcacttcagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

151

Amino Acids

16.57

Weight (kDa)

10.91

Isoelectric Point (pI)

25.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 145
AclWI GGATC 2 cut(s) 152, 165
AcuI CTGAAG 1 cut(s) 433
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 7 cut(s) 55, 76, 77, 151, 354, 383, 438
AgsI TTSAA 2 cut(s) 172, 257
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 2 cut(s) 421, 453
AluI AGCT 2 cut(s) 421, 453
AlwI GGATC 2 cut(s) 152, 165
AoxI GGCC 3 cut(s) 3, 409, 435
ApeKI GCWGC 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 261
AspS9I GGNCC 5 cut(s) 95, 352, 381, 410, 436
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 5 cut(s) 305, 331, 360, 389, 415
AvaII GGWCC 3 cut(s) 95, 352, 381
BaeGI GKGCMC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 157
BbvCI CCTCAGC 3 cut(s) 372, 401, 427
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 190, 192
BciT130I CCWGG 1 cut(s) 193
BcnI CCSGG 1 cut(s) 439
BglII AGATCT 1 cut(s) 73
BisI GCNGC 1 cut(s) 36
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 193, 439
Bme18I GGWCC 3 cut(s) 95, 352, 381
BmgT120I GGNCC 5 cut(s) 95, 352, 381, 410, 436
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 193, 439
BmsI GCATC 2 cut(s) 4, 90
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 4 cut(s) 343, 372, 401, 427
Bpu1102I GCTNAGC 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 439
BsaJI CCNNGG 5 cut(s) 322, 348, 377, 406, 432
Bsc4I CCNNNNNNNGG 7 cut(s) 55, 76, 77, 151, 354, 383, 438
Bse118I RCCGGY 1 cut(s) 151
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 5 cut(s) 322, 348, 377, 406, 432
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 7 cut(s) 55, 76, 77, 151, 354, 383, 438
BseMII CTCAG 4 cut(s) 386, 415, 431, 441
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 3 cut(s) 5, 411, 437
BsiSI CCGG 4 cut(s) 152, 355, 384, 439
BslI CCNNNNNNNGG 7 cut(s) 55, 76, 77, 151, 354, 383, 438
BsnI GGCC 3 cut(s) 5, 411, 437
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 73, 157, 268
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 2 cut(s) 56, 145
BspANI GGCC 3 cut(s) 5, 411, 437
BspCNI CTCAG 4 cut(s) 385, 414, 430, 440
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 159
BspPI GGATC 2 cut(s) 152, 165
BsrFI RCCGGY 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 5 cut(s) 322, 348, 377, 406, 432
BssMI GATC 3 cut(s) 73, 157, 268
Bst2UI CCWGG 1 cut(s) 193
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 5 cut(s) 343, 372, 401, 417, 427
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 3 cut(s) 76, 160, 271
BstMBI GATC 3 cut(s) 73, 157, 268
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 53
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 191, 437
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 73, 157
BstYI RGATCY 2 cut(s) 73, 157
BsuRI GGCC 3 cut(s) 5, 411, 437
BtsCI GGATG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 149
CciI TCATGA 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 5 cut(s) 95, 352, 381, 410, 436
Csp6I GTAC 1 cut(s) 189
CviAII CATG 2 cut(s) 221, 244
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 5 cut(s) 343, 372, 401, 417, 427
DpnI GATC 3 cut(s) 75, 159, 270
DpnII GATC 3 cut(s) 73, 157, 268
Eco47I GGWCC 3 cut(s) 95, 352, 381
Eco57I CTGAAG 1 cut(s) 433
EcoO109I RGGNCCY 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 224, 247
FaiI YATR 3 cut(s) 11, 222, 245
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 2 cut(s) 220, 243
FauI CCCGC 2 cut(s) 49, 152
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 3 cut(s) 5, 411, 437
HapII CCGG 4 cut(s) 152, 355, 384, 439
Hin1II CATG 2 cut(s) 224, 247
HinfI GANTC 2 cut(s) 257, 331
HpaII CCGG 4 cut(s) 152, 355, 384, 439
HphI GGTGA 5 cut(s) 305, 331, 360, 389, 415
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 3 cut(s) 221, 266, 287
HpyAV CCTTC 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 53
HpyF3I CTNAG 5 cut(s) 343, 372, 401, 417, 427
Hsp92II CATG 2 cut(s) 224, 247
Kzo9I GATC 3 cut(s) 73, 157, 268
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 4, 90
MaeIII GTNAC 2 cut(s) 19, 272
MalI GATC 3 cut(s) 75, 159, 270
MboI GATC 3 cut(s) 73, 157, 268
MflI RGATCY 2 cut(s) 73, 157
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 1 cut(s) 116
MlyI GAGTC 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 261
MspI CCGG 4 cut(s) 152, 355, 384, 439
MspR9I CCNGG 2 cut(s) 193, 439
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 53
NciI CCSGG 1 cut(s) 439
NdeII GATC 3 cut(s) 73, 157, 268
NlaIII CATG 2 cut(s) 224, 247
NlaIV GGNNCC 1 cut(s) 159
NmeAIII GCCGAG 4 cut(s) 347, 373, 402, 431
NmuCI GTSAC 1 cut(s) 19
PagI TCATGA 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 5 cut(s) 95, 352, 381, 410, 436
PsuI RGATCY 2 cut(s) 73, 157
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 3 cut(s) 73, 157, 268
Sau96I GGNCC 5 cut(s) 95, 352, 381, 410, 436
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 2 cut(s) 193, 439
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 2 cut(s) 4, 90
SinI GGWCC 3 cut(s) 95, 352, 381
Sse9I AATT 1 cut(s) 116
SsiI CCGC 2 cut(s) 56, 145
StyD4I CCNGG 2 cut(s) 191, 437
TaqI TCGA 1 cut(s) 296
TasI AATT 1 cut(s) 116
TfiI GAWTC 1 cut(s) 257
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 5 cut(s) 209, 232, 237, 354, 383
VpaK11BI GGWCC 3 cut(s) 95, 352, 381
XmnI GAANNNNTTC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.