Rmu_sc0003262.1_g000012

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003262.1
N/A
Physical Location & Seq
Reverse (-)
31242 .. 31724
483 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
atgtttctgaggcgacatattgatcctagcctatgctggaagtaccttcagttgaagacacccaaagaacggttggatgcccttaagggacgtttagggaacattcatgacaccttgctcccagaactgaccattcagtggaatgaaatccgcttgcttgactacaaaagggtcaatgacttcaacaatgacatgttgcgcctgaaggcatgtctaaatttctgtggaaaggaactcacagaagatgatatgatccagaagactctttccatttttcccaattcagcacttatactagagaatcagtataggctggagtatgacaacaaaagaatcataacctttaataaacagatcaacctactgcaagtggctgagaggcataatgaggttttttttaacaacaatgccagacctgttgggacaaagaaaattcctgagggttcttatggaaaaatgaaaggtggaaagaacctggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

18.87

Weight (kDa)

9.26

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AciI CCGC 1 cut(s) 151
AclWI GGATC 2 cut(s) 17, 247
AcsI RAATTY 2 cut(s) 217, 432
AcuI CTGAAG 2 cut(s) 32, 224
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 69, 138
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 2 cut(s) 55, 184
AjnI CCWGG 1 cut(s) 474
AlwI GGATC 2 cut(s) 17, 247
ApoI RAATTY 2 cut(s) 217, 432
AspLEI GCGC 1 cut(s) 201
AxyI CCTNAGG 1 cut(s) 438
BbsI GAAGAC 2 cut(s) 62, 266
BciT130I CCWGG 1 cut(s) 476
BfaI CTAG 2 cut(s) 27, 296
BfrI CTTAAG 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 476
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 2 cut(s) 62, 266
BpmI CTGGAG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 138
Bse21I CCTNAGG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 476
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 69, 138
BseMII CTCAG 2 cut(s) 366, 429
BslFI GGGAC 2 cut(s) 102, 436
BslI CCNNNNNNNGG 2 cut(s) 69, 138
BsmFI GGGAC 2 cut(s) 102, 436
Bsp143I GATC 3 cut(s) 22, 252, 354
BspACI CCGC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 367, 430
BspHI TCATGA 1 cut(s) 106
BspPI GGATC 2 cut(s) 17, 247
BspTI CTTAAG 1 cut(s) 83
BssMI GATC 3 cut(s) 22, 252, 354
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 72
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 8, 375, 438
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 3 cut(s) 25, 255, 357
BstMBI GATC 3 cut(s) 22, 252, 354
BstNI CCWGG 1 cut(s) 476
BstNSI RCATGY 2 cut(s) 196, 213
BstSCI CCNGG 1 cut(s) 474
BstV2I GAAGAC 2 cut(s) 62, 266
Bsu36I CCTNAGG 1 cut(s) 438
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 107, 193, 210
CviJI RGCY 3 cut(s) 30, 313, 374
CviKI_1 RGCY 3 cut(s) 30, 313, 374
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 3 cut(s) 8, 375, 438
DpnI GATC 3 cut(s) 24, 254, 356
DpnII GATC 3 cut(s) 22, 252, 354
Eco57I CTGAAG 2 cut(s) 32, 224
Eco81I CCTNAGG 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 474
FaeI CATG 3 cut(s) 110, 196, 213
FaqI GGGAC 2 cut(s) 102, 436
FatI CATG 3 cut(s) 106, 192, 209
FokI GGATG 1 cut(s) 89
FspBI CTAG 2 cut(s) 27, 296
GlaI GCGC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 335
HhaI GCGC 1 cut(s) 201
Hin1II CATG 3 cut(s) 110, 196, 213
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 3 cut(s) 262, 301, 333
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 107, 256, 437
HpyAV CCTTC 2 cut(s) 56, 199
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 1 cut(s) 367
HpyF3I CTNAG 3 cut(s) 8, 375, 438
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 3 cut(s) 110, 196, 213
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 22, 252, 354
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 9 cut(s) 22, 135, 215, 269, 299, 424, 429, 450, 461
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 27, 296
MaeII ACGT 1 cut(s) 91
MalI GATC 3 cut(s) 24, 254, 356
MboI GATC 3 cut(s) 22, 252, 354
MboII GAAGA 3 cut(s) 67, 254, 271
MluCI AATT 3 cut(s) 217, 280, 432
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 4 cut(s) 3, 372, 382, 433
MseI TTAA 3 cut(s) 84, 345, 399
MspCI CTTAAG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 476
MvaI CCWGG 1 cut(s) 476
NdeII GATC 3 cut(s) 22, 252, 354
NlaIII CATG 3 cut(s) 110, 196, 213
NspI RCATGY 2 cut(s) 196, 213
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 192
PfeI GAWTC 2 cut(s) 301, 333
PflMI CCANNNNNTGG 1 cut(s) 138
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PscI ACATGT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 3 cut(s) 84, 345, 399
Sau3AI GATC 3 cut(s) 22, 252, 354
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 476
SetI ASST 9 cut(s) 48, 94, 116, 344, 363, 393, 418, 466, 477
SfaNI GCATC 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 3 cut(s) 217, 280, 432
SsiI CCGC 1 cut(s) 151
SspMI CTAG 2 cut(s) 27, 296
StyD4I CCNGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 94
TasI AATT 3 cut(s) 217, 280, 432
TfiI GAWTC 2 cut(s) 301, 333
Tru1I TTAA 3 cut(s) 84, 345, 399
Tru9I TTAA 3 cut(s) 84, 345, 399
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 95, 159, 473
TspRI CASTG 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 138
Vha464I CTTAAG 1 cut(s) 83
XapI RAATTY 2 cut(s) 217, 432
XceI RCATGY 2 cut(s) 196, 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XspI CTAG 2 cut(s) 27, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.