Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003263.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

50076 .. 52919

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggacctggacccggacccgggtggacacattaacccagctgtgacctttggtctgttcctagcaaggaagctctccctcaccagagctgttttctacatcatcatgcagacccttggagccattgctggtgctggagttgtgaaggccttccagaagacccagtatgagcttttgggtggtggagccaactatgtgaaccatggctacaccaagggtgatggccttggggctgagattgttggcacctttgtgcttgtttacactgtcttctctgctactgatgctaagaggaaagctagagactctcatgtccctattttggcgcctcttccaattgggtttgctgtgttcctggttcacttggccaccatccccattacaggaactggcatcaaccctgccaggagtctcggagctgccatcatctacgacaaggagcgtgcttgggatgaccagattttggcgcctcttccaattgggtttgctgtgttcctggttcacttggccaccatccccattacaggaactggcatcaaccctgccaggagtctcggagctgccatcatctacgacaaggagcgtgcttgggatgaccagtggatcttctgggttggaccattcattggtgctgcacttgctgctatgtaccaccagatagtcatcagggccattcctttcaagtccagggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

231

Amino Acids

24.77

Weight (kDa)

9.12

Isoelectric Point (pI)

22.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	8 - 151	2e-48	Major intrinsic protein
MIP	PF00230	145 - 218	2.9e-25	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccB1I	GGYRCC	3 cut(s)	245, 325, 466
AccB7I	CCANNNNNTGG	2 cut(s)	463, 626
AclWI	GGATC	1 cut(s)	611
AcoI	YGGCCR	2 cut(s)	366, 507
AcyI	GRCGYC	2 cut(s)	326, 467
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	8 cut(s)	13, 19, 20, 322, 383, 463, 524, 626
AgsI	TTSAA	1 cut(s)	682
AhdI	GACNNNNNGTC	1 cut(s)	51
AjnI	CCWGG	6 cut(s)	6, 354, 404, 495, 545, 686
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	7 cut(s)	41, 73, 89, 172, 299, 419, 560
AluI	AGCT	7 cut(s)	41, 73, 89, 172, 299, 419, 560
Alw26I	GTCTC	3 cut(s)	297, 416, 557
AlwI	GGATC	1 cut(s)	611
AlwNI	CAGNNNCTG	2 cut(s)	389, 530
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	6 cut(s)	147, 223, 366, 507, 669, 690
ApeKI	GCWGC	4 cut(s)	419, 560, 632, 641
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	2 cut(s)	328, 469
AspS9I	GGNCC	6 cut(s)	4, 10, 16, 617, 669, 690
AsuC2I	CCSGG	3 cut(s)	14, 20, 21
AsuHPI	GGTGA	2 cut(s)	73, 230
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	4 cut(s)	4, 10, 16, 617
BalI	TGGCCA	2 cut(s)	368, 509
BanI	GGYRCC	3 cut(s)	245, 325, 466
BbsI	GAAGAC	2 cut(s)	164, 262
BbvI	GCAGC	4 cut(s)	406, 547, 619, 628
BccI	CCATC	5 cut(s)	215, 380, 431, 521, 572
BciT130I	CCWGG	6 cut(s)	8, 356, 406, 497, 547, 688
BcnI	CCSGG	3 cut(s)	14, 20, 21
BcoDI	GTCTC	3 cut(s)	297, 416, 557
BfaI	CTAG	2 cut(s)	62, 300
BfoI	RGCGCY	2 cut(s)	329, 470
BisI	GCNGC	4 cut(s)	420, 561, 633, 642
BlsI	GCNGC	4 cut(s)	421, 562, 634, 643
Bme1390I	CCNGG	9 cut(s)	8, 14, 20, 21, 356, 406, 497, 547, 688
Bme18I	GGWCC	4 cut(s)	4, 10, 16, 617
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	6 cut(s)	4, 10, 16, 617, 669, 690
BmiI	GGNNCC	7 cut(s)	12, 18, 121, 187, 247, 327, 468
BmrFI	CCNGG	9 cut(s)	8, 14, 20, 21, 356, 406, 497, 547, 688
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	3 cut(s)	274, 402, 543
BmuI	ACTGGG	1 cut(s)	157
BpiI	GAAGAC	2 cut(s)	164, 262
BpmI	CTGGAG	1 cut(s)	156
BpuMI	CCSGG	3 cut(s)	14, 20, 21
BsaBI	GATNNNNATC	1 cut(s)	662
BsaHI	GRCGYC	2 cut(s)	326, 467
BsaJI	CCNNGG	6 cut(s)	19, 115, 202, 213, 226, 687
Bsc4I	CCNNNNNNNGG	8 cut(s)	13, 19, 20, 322, 383, 463, 524, 626
Bse1I	ACTGG	4 cut(s)	163, 394, 535, 598
Bse3DI	GCAATG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	662
BseBI	CCWGG	6 cut(s)	8, 356, 406, 497, 547, 688
BseDI	CCNNGG	6 cut(s)	19, 115, 202, 213, 226, 687
BseGI	GGATG	4 cut(s)	372, 457, 513, 598
BseJI	GATNNNNATC	1 cut(s)	662
BseLI	CCNNNNNNNGG	8 cut(s)	13, 19, 20, 322, 383, 463, 524, 626
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	4 cut(s)	163, 394, 535, 598
BseXI	GCAGC	4 cut(s)	406, 547, 619, 628
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	618
BshFI	GGCC	6 cut(s)	149, 225, 368, 509, 671, 692
BshNI	GGYRCC	3 cut(s)	245, 325, 466
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	14, 20
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	8 cut(s)	13, 19, 20, 322, 383, 463, 524, 626
BsmAI	GTCTC	3 cut(s)	297, 416, 557
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	6 cut(s)	149, 225, 368, 509, 671, 692
BsoBI	CYCGRG	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	603
Bsp19I	CCATGG	1 cut(s)	202
BspANI	GGCC	6 cut(s)	149, 225, 368, 509, 671, 692
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	7 cut(s)	12, 18, 121, 187, 247, 327, 468
BspPI	GGATC	1 cut(s)	611
BspT107I	GGYRCC	3 cut(s)	245, 325, 466
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	4 cut(s)	163, 394, 535, 598
BssECI	CCNNGG	6 cut(s)	19, 115, 202, 213, 226, 687
BssMI	GATC	1 cut(s)	603
BssNI	GRCGYC	2 cut(s)	326, 467
BssT1I	CCWWGG	4 cut(s)	115, 202, 213, 226
Bst2UI	CCWGG	6 cut(s)	8, 356, 406, 497, 547, 688
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	2 cut(s)	336, 477
BstACI	GRCGYC	2 cut(s)	326, 467
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	444, 585
BstDEI	CTNAG	2 cut(s)	234, 288
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	4 cut(s)	372, 457, 513, 598
BstH2I	RGCGCY	2 cut(s)	329, 470
BstHHI	GCGC	2 cut(s)	328, 469
BstKTI	GATC	1 cut(s)	606
BstMAI	GTCTC	3 cut(s)	297, 416, 557
BstMBI	GATC	1 cut(s)	603
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 638, 641
BstNI	CCWGG	6 cut(s)	8, 356, 406, 497, 547, 688
BstSCI	CCNGG	9 cut(s)	6, 12, 18, 19, 354, 404, 495, 545, 686
BstV1I	GCAGC	4 cut(s)	406, 547, 619, 628
BstV2I	GAAGAC	2 cut(s)	164, 262
BstX2I	RGATCY	1 cut(s)	603
BstYI	RGATCY	1 cut(s)	603
BsuRI	GGCC	6 cut(s)	149, 225, 368, 509, 671, 692
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	4 cut(s)	372, 457, 513, 598
BtsIMutI	CAGTG	2 cut(s)	264, 605
Cac8I	GCNNGC	2 cut(s)	444, 585
CaiI	CAGNNNCTG	2 cut(s)	389, 530
CfoI	GCGC	2 cut(s)	328, 469
Cfr13I	GGNCC	6 cut(s)	4, 10, 16, 617, 669, 690
Cfr9I	CCCGGG	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	3 cut(s)	106, 203, 311
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	2 cut(s)	234, 288
DinI	GGCGCC	2 cut(s)	327, 468
DpnI	GATC	1 cut(s)	605
DpnII	GATC	1 cut(s)	603
DrdI	GACNNNNNNGTC	1 cut(s)	311
DriI	GACNNNNNGTC	1 cut(s)	51
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	2 cut(s)	366, 507
Eam1104I	CTCTTC	2 cut(s)	336, 477
Eam1105I	GACNNNNNGTC	1 cut(s)	51
EarI	CTCTTC	2 cut(s)	336, 477
Eco130I	CCWWGG	4 cut(s)	115, 202, 213, 226
Eco147I	AGGCCT	1 cut(s)	149
Eco47I	GGWCC	4 cut(s)	4, 10, 16, 617
Eco88I	CYCGRG	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	690
EcoRII	CCWGG	6 cut(s)	6, 354, 404, 495, 545, 686
EcoT14I	CCWWGG	4 cut(s)	115, 202, 213, 226
EgeI	GGCGCC	2 cut(s)	327, 468
EheI	GGCGCC	2 cut(s)	327, 468
ErhI	CCWWGG	4 cut(s)	115, 202, 213, 226
FaeI	CATG	3 cut(s)	109, 206, 314
FaiI	YATR	6 cut(s)	107, 168, 195, 204, 312, 647
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	3 cut(s)	105, 202, 310
Fnu4HI	GCNGC	4 cut(s)	420, 561, 633, 642
FokI	GGATG	4 cut(s)	359, 464, 500, 605
Fsp4HI	GCNGC	4 cut(s)	420, 561, 633, 642
FspBI	CTAG	2 cut(s)	62, 300
GlaI	GCGC	2 cut(s)	327, 468
GluI	GCNGC	4 cut(s)	420, 561, 633, 642
GsaI	CCCAGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	156
HaeII	RGCGCY	2 cut(s)	329, 470
HaeIII	GGCC	6 cut(s)	149, 225, 368, 509, 671, 692
HapII	CCGG	2 cut(s)	14, 20
HhaI	GCGC	2 cut(s)	328, 469
Hin1I	GRCGYC	2 cut(s)	326, 467
Hin1II	CATG	3 cut(s)	109, 206, 314
Hin6I	GCGC	2 cut(s)	326, 467
HinP1I	GCGC	2 cut(s)	326, 467
HinfI	GANTC	3 cut(s)	305, 409, 550
HpaII	CCGG	2 cut(s)	14, 20
HphI	GGTGA	2 cut(s)	73, 230
Hpy166II	GTNNAC	5 cut(s)	26, 199, 262, 361, 502
Hpy188I	TCNGA	2 cut(s)	416, 557
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	5 cut(s)	26, 199, 262, 361, 502
HpyAV	CCTTC	2 cut(s)	139, 160
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	109, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 638, 641
HpyF3I	CTNAG	2 cut(s)	234, 288
Hsp92I	GRCGYC	2 cut(s)	326, 467
Hsp92II	CATG	3 cut(s)	109, 206, 314
HspAI	GCGC	2 cut(s)	326, 467
KasI	GGCGCC	2 cut(s)	325, 466
Kzo9I	GATC	1 cut(s)	603
LmnI	GCTCC	6 cut(s)	119, 185, 416, 439, 557, 580
Lsp1109I	GCAGC	4 cut(s)	406, 547, 619, 628
LweI	GCATC	3 cut(s)	274, 402, 543
MaeI	CTAG	2 cut(s)	62, 300
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	605
MboI	GATC	1 cut(s)	603
MboII	GAAGA	5 cut(s)	169, 262, 323, 464, 598
MfeI	CAATTG	2 cut(s)	336, 477
MflI	RGATCY	1 cut(s)	603
MlsI	TGGCCA	2 cut(s)	368, 509
MluCI	AATT	2 cut(s)	336, 477
MluNI	TGGCCA	2 cut(s)	368, 509
Mly113I	GGCGCC	2 cut(s)	326, 467
MlyI	GAGTC	3 cut(s)	299, 418, 559
MmeI	TCCRAC	1 cut(s)	595
MnlI	CCTC	4 cut(s)	89, 285, 339, 480
Mox20I	TGGCCA	2 cut(s)	368, 509
MroXI	GAANNNNTTC	1 cut(s)	149
MscI	TGGCCA	2 cut(s)	368, 509
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	2 cut(s)	104, 251
Msp20I	TGGCCA	2 cut(s)	368, 509
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	2 cut(s)	14, 20
MspR9I	CCNGG	9 cut(s)	8, 14, 20, 21, 356, 406, 497, 547, 688
MunI	CAATTG	2 cut(s)	336, 477
MvaI	CCWGG	6 cut(s)	8, 356, 406, 497, 547, 688
MwoI	GCNNNNNNNGC	3 cut(s)	284, 638, 641
NarI	GGCGCC	2 cut(s)	326, 467
NciI	CCSGG	3 cut(s)	14, 20, 21
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	1 cut(s)	603
NlaIII	CATG	3 cut(s)	109, 206, 314
NlaIV	GGNNCC	7 cut(s)	12, 18, 121, 187, 247, 327, 468
NmuCI	GTSAC	1 cut(s)	43
OliI	CACNNNNGTG	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	149
PflMI	CCANNNNNTGG	2 cut(s)	463, 626
PkrI	GCNGC	4 cut(s)	421, 562, 634, 643
PleI	GAGTC	3 cut(s)	299, 417, 558
PluTI	GGCGCC	2 cut(s)	329, 470
PpsI	GAGTC	3 cut(s)	299, 417, 558
Psp6I	CCWGG	6 cut(s)	6, 354, 404, 495, 545, 686
PspFI	CCCAGC	1 cut(s)	37
PspGI	CCWGG	6 cut(s)	6, 354, 404, 495, 545, 686
PspN4I	GGNNCC	7 cut(s)	12, 18, 121, 187, 247, 327, 468
PspPI	GGNCC	6 cut(s)	4, 10, 16, 617, 669, 690
PsrI	GAACNNNNNNTAC	2 cut(s)	191, 223
PstNI	CAGNNNCTG	2 cut(s)	389, 530
PsuI	RGATCY	1 cut(s)	603
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	2 cut(s)	104, 251
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	4 cut(s)	420, 561, 633, 642
Sau3AI	GATC	1 cut(s)	603
Sau96I	GGNCC	6 cut(s)	4, 10, 16, 617, 669, 690
SchI	GAGTC	3 cut(s)	299, 418, 559
ScrFI	CCNGG	9 cut(s)	8, 14, 20, 21, 356, 406, 497, 547, 688
SfaNI	GCATC	3 cut(s)	274, 402, 543
SfoI	GGCGCC	2 cut(s)	327, 468
SinI	GGWCC	4 cut(s)	4, 10, 16, 617
SmaI	CCCGGG	1 cut(s)	21
SmiMI	CAYNNNNRTG	2 cut(s)	104, 251
Sse9I	AATT	2 cut(s)	336, 477
SseBI	AGGCCT	1 cut(s)	149
SspDI	GGCGCC	2 cut(s)	325, 466
SspMI	CTAG	2 cut(s)	62, 300
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	9 cut(s)	6, 12, 18, 19, 354, 404, 495, 545, 686
StyI	CCWWGG	4 cut(s)	115, 202, 213, 226
TaaI	ACNGT	1 cut(s)	268
TasI	AATT	2 cut(s)	336, 477
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	2 cut(s)	271, 605
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	4 cut(s)	419, 560, 632, 641
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	613
TspMI	CCCGGG	1 cut(s)	19
TspRI	CASTG	2 cut(s)	271, 605
Van91I	CCANNNNNTGG	2 cut(s)	463, 626
VpaK11BI	GGWCC	4 cut(s)	4, 10, 16, 617
XmaI	CCCGGG	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	62, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.