Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003279.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 259

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atggagtcccaaaaccagcaactcccccaaacccaactaacccaaaactcttctccagccaagtttccggtcaaagttctacaccaagtgaaatccaatttaatcttccgatcgaaatgggccgaattgaatggcgcaatgggcgacttgggcacctacatccccatagtggtcgctctaaccctagctagggacttaaacctcggcaccacactgatcttcactgggatctacaacatcatcaccggtgccatttac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

86

Amino Acids

9.48

Weight (kDa)

9.22

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_MOT1	PF16983	41 - 86	8.6e-09	Molybdate transporter of MFS superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	152, 206, 248
AclWI	GGATC	1 cut(s)	236
AdeI	CACNNNGTG	1 cut(s)	88
AfiI	CCNNNNNNNGG	3 cut(s)	169, 189, 190
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	120
AsiGI	ACCGGT	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	155
BanI	GGYRCC	3 cut(s)	152, 206, 248
BfaI	CTAG	2 cut(s)	185, 189
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	3 cut(s)	154, 208, 250
BmrI	ACTGGG	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	2 cut(s)	67, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 189, 190
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	169, 189, 190
BseMI	GCAATG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	3 cut(s)	152, 206, 248
BshTI	ACCGGT	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	68, 246
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	169, 189, 190
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	110, 216, 228
BspANI	GGCC	1 cut(s)	122
BspLI	GGNNCC	3 cut(s)	154, 208, 250
BspPI	GGATC	1 cut(s)	236
BspT107I	GGYRCC	3 cut(s)	152, 206, 248
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	3 cut(s)	110, 216, 228
Bst6I	CTCTTC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	113, 219, 231
BstMBI	GATC	3 cut(s)	110, 216, 228
BstMCI	CGRYCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 150
BstSLI	GKGCMC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	212, 222
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	120
CspAI	ACCGGT	1 cut(s)	245
CviJI	RGCY	3 cut(s)	59, 122, 188
CviKI_1	RGCY	3 cut(s)	59, 122, 188
DpnI	GATC	3 cut(s)	112, 218, 230
DpnII	GATC	3 cut(s)	110, 216, 228
DraIII	CACNNNGTG	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
FaiI	YATR	1 cut(s)	167
FaqI	GGGAC	1 cut(s)	206
FokI	GGATG	1 cut(s)	146
FspBI	CTAG	2 cut(s)	185, 189
GlaI	GCGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	2 cut(s)	68, 246
HhaI	GCGC	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	68, 246
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 150
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	110, 216, 228
LpnPI	CCDG	4 cut(s)	29, 69, 81, 210
MaeI	CTAG	2 cut(s)	185, 189
MalI	GATC	3 cut(s)	112, 218, 230
MboI	GATC	3 cut(s)	110, 216, 228
MboII	GAAGA	3 cut(s)	42, 97, 211
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	2 cut(s)	97, 125
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	1 cut(s)	212
MseI	TTAA	2 cut(s)	101, 197
MspI	CCGG	2 cut(s)	68, 246
MwoI	GCNNNNNNNGC	2 cut(s)	141, 150
NdeII	GATC	3 cut(s)	110, 216, 228
NlaIV	GGNNCC	3 cut(s)	154, 208, 250
NmeAIII	GCCGAG	1 cut(s)	183
PinAI	ACCGGT	1 cut(s)	245
Ple19I	CGATCG	1 cut(s)	113
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	154, 208, 250
PspPI	GGNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	228
PvuI	CGATCG	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	101, 197
Sau3AI	GATC	3 cut(s)	110, 216, 228
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	3 cut(s)	158, 190, 204
SgrAI	CRCCGGYG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	97, 125
SspMI	CTAG	2 cut(s)	185, 189
TaqI	TCGA	1 cut(s)	113
TasI	AATT	2 cut(s)	97, 125
Tru1I	TTAA	2 cut(s)	101, 197
Tru9I	TTAA	2 cut(s)	101, 197
TscAI	CASTG	2 cut(s)	219, 229
TspRI	CASTG	2 cut(s)	219, 229
XspI	CTAG	2 cut(s)	185, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.