Rmu_sc0003289.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003289.1
N/A
Physical Location & Seq
Forward (+)
97110 .. 97472
363 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
atgtcgaatgaaccaagactcgactttctcatgcttgactcaacgggtttggaataccatagctgggtgaccgacgttgagaaccacctcatttctttgggaatattacccataatctggccaccaaacctggatcttgttttcgagcctacaaccactaagcatgctcgagaaatcatcctgatgcgacgacacatggataaatcacttcgtttagagtacatgtcgatcagagatgcaagagaattatgggtagcactagaagagcattttggcaatgtccaagattccctcctatctgatttgaaggtccaatggagtaatctgcgtgttgcggacttcaaaactgttgctgaatattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

120

Amino Acids

14.12

Weight (kDa)

5.1

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 117
AciI CCGC 1 cut(s) 335
AclWI GGATC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 119
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 64, 117
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 2 cut(s) 307, 343
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
AlwI GGATC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 1 cut(s) 310
BalI TGGCCA 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 174, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 117
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 64, 117
BseMI GCAATG 1 cut(s) 283
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 64, 117
BsnI GGCC 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 168
Bsp143I GATC 2 cut(s) 133, 228
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 121
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 283
BssMI GATC 2 cut(s) 133, 228
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 159
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 2 cut(s) 136, 231
BstMBI GATC 2 cut(s) 133, 228
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 2 cut(s) 167, 226
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 220
CviAII CATG 4 cut(s) 31, 164, 196, 223
CviJI RGCY 3 cut(s) 63, 121, 148
CviKI_1 RGCY 3 cut(s) 63, 121, 148
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 135, 230
DpnII GATC 2 cut(s) 133, 228
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 129
FaeI CATG 4 cut(s) 34, 167, 199, 226
FaiI YATR 7 cut(s) 32, 60, 113, 165, 197, 224, 250
FatI CATG 4 cut(s) 30, 163, 195, 222
FokI GGATG 1 cut(s) 164
FspBI CTAG 1 cut(s) 260
GsaI CCCAGC 1 cut(s) 67
HaeIII GGCC 1 cut(s) 121
Hin1II CATG 4 cut(s) 34, 167, 199, 226
HinfI GANTC 3 cut(s) 18, 38, 287
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 233, 301
Hpy188III TCNNGA 2 cut(s) 170, 181
Hpy99I CGWCG 2 cut(s) 77, 192
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 4 cut(s) 34, 167, 199, 226
Kzo9I GATC 2 cut(s) 133, 228
LguI GCTCTTC 1 cut(s) 258
LpnPI CCDG 5 cut(s) 49, 103, 116, 143, 194
LweI GCATC 2 cut(s) 174, 226
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 135, 230
MboI GATC 2 cut(s) 133, 228
MboII GAAGA 1 cut(s) 275
MflI RGATCY 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 1 cut(s) 245
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 2 cut(s) 98, 302
Mox20I TGGCCA 1 cut(s) 121
MscI TGGCCA 1 cut(s) 121
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
NdeII GATC 2 cut(s) 133, 228
NlaIII CATG 4 cut(s) 34, 167, 199, 226
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 2 cut(s) 167, 226
PaeI GCATGC 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 168
PciI ACATGT 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 117
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
PscI ACATGT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 129
PspEI GGTNACC 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 1 cut(s) 129
PspPI GGNCC 1 cut(s) 310
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 133, 228
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 1 cut(s) 131
SetI ASST 5 cut(s) 65, 78, 90, 132, 312
SfaNI GCATC 2 cut(s) 174, 226
Sfr274I CTCGAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 310
SlaI CTCGAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 245
SsiI CCGC 1 cut(s) 335
SspI AATATT 2 cut(s) 105, 359
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 1 cut(s) 78
TaqI TCGA 5 cut(s) 5, 21, 144, 169, 227
TaqII GACCGA 1 cut(s) 86
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 1 cut(s) 287
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 310
XceI RCATGY 2 cut(s) 167, 226
XhoI CTCGAG 1 cut(s) 168
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.