Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003301.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

27261 .. 27746

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgtttgagctgcatgtccattctacacaatgggtagtcgagaccgtgcactcgaaatggctaagctgcttcatcctggaaatcaaatccattgcggtagggtcatatcacgtggtgatagcagaaggtcgaaagggtctaggtgtcctgcttgcccgagaatctgctgttttgatccttgatgatacgaaagatgtatggacaaatgacaaccaggataatgtaatagtaatgccaatttaccatttctttaaatctagttgtcaacaatttggcctcagtaatagtaagccttattctgagttgaagaccgatgaatgtgatcagtatggaggagcttatcttgcaaatgtacttcaacttcttaggcatatcaacaccatcttctttaatgaaatcaagttgcagtggtgggatcttatcggcagagatgtgaggctagctcgtcctgaaaatccttcagaaggaagtcttgaagggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

161

Amino Acids

18.41

Weight (kDa)

5.44

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	2 cut(s)	169, 423
AcuI	CTGAAG	1 cut(s)	444
AcvI	CACGTG	1 cut(s)	112
AdeI	CACNNNGTG	1 cut(s)	115
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	3 cut(s)	307, 359, 476
AjnI	CCWGG	2 cut(s)	75, 213
AluBI	AGCT	4 cut(s)	10, 66, 338, 443
AluI	AGCT	4 cut(s)	10, 66, 338, 443
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	35
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	169, 423
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	1 cut(s)	274
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	10, 66
AsuHPI	GGTGA	1 cut(s)	127
AsuNHI	GCTAGC	1 cut(s)	439
AvaI	CYCGRG	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BbrPI	CACGTG	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	2 cut(s)	77, 215
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	3 cut(s)	140, 258, 440
BisI	GCNGC	2 cut(s)	11, 67
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	2 cut(s)	12, 68
Bme1390I	CCNGG	2 cut(s)	77, 215
BmeT110I	CYCGRG	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	77, 215
BmtI	GCTAGC	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
Bpu1102I	GCTNAGC	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	77, 215
BseGI	GGATG	2 cut(s)	72, 486
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	291, 292
BseRI	GAGGAG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	53
BshFI	GGCC	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	276
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	174, 322, 415
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	2 cut(s)	291, 292
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	169, 423
BspTNI	GGTCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	90
BssMI	GATC	3 cut(s)	174, 322, 415
Bst2UI	CCWGG	2 cut(s)	77, 215
Bst4CI	ACNGT	1 cut(s)	46
BstBAI	YACGTR	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	153, 441
BstDEI	CTNAG	4 cut(s)	62, 278, 300, 365
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	72, 486
BstKTI	GATC	3 cut(s)	177, 325, 418
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	3 cut(s)	174, 322, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	2 cut(s)	77, 215
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	75, 213
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	72, 486
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	153, 441
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	8 cut(s)	10, 61, 66, 276, 292, 338, 439, 443
CviKI_1	RGCY	8 cut(s)	10, 61, 66, 276, 292, 338, 439, 443
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	4 cut(s)	62, 278, 300, 365
DpnI	GATC	3 cut(s)	176, 324, 417
DpnII	GATC	3 cut(s)	174, 322, 415
DraI	TTTAAA	1 cut(s)	253
DraIII	CACNNNGTG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	444
Eco72I	CACGTG	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	156
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	75, 213
FaeI	CATG	1 cut(s)	17
FaiI	YATR	5 cut(s)	15, 106, 199, 330, 372
FalI	AAGNNNNNCTT	1 cut(s)	456
FatI	CATG	1 cut(s)	13
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	11, 67
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	11, 67
FspBI	CTAG	3 cut(s)	140, 258, 440
GluI	GCNGC	2 cut(s)	11, 67
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	49, 266
Hpy188I	TCNGA	2 cut(s)	301, 463
Hpy188III	TCNNGA	3 cut(s)	40, 449, 473
Hpy8I	GTNNAC	2 cut(s)	49, 266
HpyAV	CCTTC	4 cut(s)	119, 458, 468, 470
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	13, 49, 347, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	4 cut(s)	62, 278, 300, 365
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	174, 322, 415
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	6 cut(s)	62, 89, 161, 200, 227, 462
Lsp1109I	GCAGC	1 cut(s)	53
MaeI	CTAG	3 cut(s)	140, 258, 440
MaeII	ACGT	1 cut(s)	111
MalI	GATC	3 cut(s)	176, 324, 417
MboI	GATC	3 cut(s)	174, 322, 415
MboII	GAAGA	2 cut(s)	319, 376
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	237, 269
MnlI	CCTC	3 cut(s)	287, 326, 429
MseI	TTAA	2 cut(s)	252, 390
MspR9I	CCNGG	2 cut(s)	77, 215
MvaI	CCWGG	2 cut(s)	77, 215
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	3 cut(s)	174, 322, 415
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	1 cut(s)	17
NspI	RCATGY	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	12, 68
PmaCI	CACGTG	1 cut(s)	112
PmlI	CACGTG	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	112
Psp6I	CCWGG	2 cut(s)	75, 213
PspCI	CACGTG	1 cut(s)	112
PspGI	CCWGG	2 cut(s)	75, 213
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	252, 390
SatI	GCNGC	2 cut(s)	11, 67
Sau3AI	GATC	3 cut(s)	174, 322, 415
ScrFI	CCNGG	2 cut(s)	77, 215
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	7 cut(s)	12, 68, 114, 130, 145, 340, 445
Sse9I	AATT	2 cut(s)	237, 269
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	3 cut(s)	140, 258, 440
StyD4I	CCNGG	2 cut(s)	75, 213
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	39, 53, 130
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	2 cut(s)	237, 269
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	252, 390
Tru9I	TTAA	2 cut(s)	252, 390
TscAI	CASTG	1 cut(s)	413
TseI	GCWGC	2 cut(s)	10, 66
TspDTI	ATGAA	3 cut(s)	61, 330, 408
TspRI	CASTG	1 cut(s)	413
VneI	GTGCAC	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	462
XceI	RCATGY	1 cut(s)	17
XspI	CTAG	3 cut(s)	140, 258, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.