Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003311.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13779 .. 16206

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgagccgacacccagcccaccccgtccccagcaccagcgctcccggcttctcgccggccttagtaggccccaagctggagtacaacgccggcggtcgggcctcggtggtgaagcataagaggagagacctggtgatagctgtgagtttgactctcatcaagagagtcttccctgccaaatttcgaacattggctcctacaccattcctatttcactttcctctccctttctccttcacctttcctaattactgttgctcctctcctctcaacctagactcctacttctccgacgaccatactctccatttcacctctgattccgagtcattctttacctctctcatcgataactccacccacaagacccacttgaatcaaatccaagcacagttgcttgtacttggtttccaagacagcggctttttatcaccaaattggttaactgcagctcaaatcttgggtacatttcatacgcctgccaggtgttcaatgaatttactgacaggtaaggatctgattagtttggacaccctagatcatttgagaagaatcaaggtcgagacctggattgttgatccgagtgctcctaccggcgacccgattccattttcgccgtccggccacgaaacaaaggcggatcaccatcaatcgaagcgtctcttcattgtcgacctcgtggtggtctcggatcatccatgcactgaatgtagagaaagaatcaaaggcccgaagttcatgatcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase HLH PPR PPR_2

Protein Analysis

249

Amino Acids

27.76

Weight (kDa)

8.61

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	3 cut(s)	93, 420, 638
AclWI	GGATC	5 cut(s)	522, 572, 648, 699, 736
AcoI	YGGCCR	1 cut(s)	622
AcsI	RAATTY	2 cut(s)	179, 496
AfaI	GTAC	3 cut(s)	83, 402, 466
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	3 cut(s)	76, 96, 682
AgsI	TTSAA	2 cut(s)	376, 492
AjnI	CCWGG	3 cut(s)	129, 482, 566
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	3 cut(s)	76, 140, 452
AluI	AGCT	3 cut(s)	76, 140, 452
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	4 cut(s)	120, 557, 665, 691
AlwI	GGATC	5 cut(s)	522, 572, 648, 699, 736
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	5 cut(s)	57, 67, 99, 622, 727
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	179, 496
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	68, 99, 728
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	6 cut(s)	121, 145, 229, 304, 423, 635
AsuII	TTCGAA	1 cut(s)	184
BauI	CACGAG	1 cut(s)	677
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	589
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	1 cut(s)	654
BceAI	ACGGC	1 cut(s)	601
BciT130I	CCWGG	3 cut(s)	131, 484, 568
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	4 cut(s)	120, 557, 665, 691
BfaI	CTAG	2 cut(s)	275, 536
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	2 cut(s)	421, 450
BlsI	GCNGC	2 cut(s)	422, 451
Bme1390I	CCNGG	4 cut(s)	45, 131, 484, 568
BmgT120I	GGNCC	3 cut(s)	68, 99, 728
BmiI	GGNNCC	2 cut(s)	70, 195
BmrFI	CCNGG	4 cut(s)	45, 131, 484, 568
BpiI	GAAGAC	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpmI	CTGGAG	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	645
BsaI	GGTCTC	3 cut(s)	120, 557, 691
BsaJI	CCNNGG	1 cut(s)	102
BsaXI	ACNNNNNCTCC	8 cut(s)	25, 55, 178, 208, 242, 263, 272, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 96, 682
Bse118I	RCCGGY	3 cut(s)	55, 89, 593
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	3 cut(s)	131, 484, 568
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	694
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	3 cut(s)	76, 96, 682
BseRI	GAGGAG	3 cut(s)	136, 250, 255
BseXI	GCAGC	1 cut(s)	461
BseYI	CCCAGC	2 cut(s)	13, 29
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	5 cut(s)	59, 69, 101, 624, 729
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	5 cut(s)	45, 56, 90, 594, 621
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	3 cut(s)	76, 96, 682
BsmAI	GTCTC	4 cut(s)	120, 557, 665, 691
BsmBI	CGTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	5 cut(s)	59, 69, 101, 624, 729
Bso31I	GGTCTC	3 cut(s)	120, 557, 691
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	6 cut(s)	514, 538, 577, 640, 691, 741
BspACI	CCGC	3 cut(s)	93, 420, 638
BspANI	GGCC	5 cut(s)	59, 69, 101, 624, 729
BspDI	ATCGAT	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	2 cut(s)	70, 195
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	5 cut(s)	522, 572, 648, 699, 736
BspT104I	TTCGAA	1 cut(s)	184
BspTNI	GGTCTC	3 cut(s)	120, 557, 691
BsrFI	RCCGGY	3 cut(s)	55, 89, 593
BssAI	RCCGGY	3 cut(s)	55, 89, 593
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	6 cut(s)	514, 538, 577, 640, 691, 741
BssSI	CACGAG	1 cut(s)	677
Bst2BI	CACGAG	1 cut(s)	677
Bst2UI	CCWGG	3 cut(s)	131, 484, 568
Bst4CI	ACNGT	2 cut(s)	254, 393
Bst6I	CTCTTC	1 cut(s)	668
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	3 cut(s)	57, 91, 480
BstDEI	CTNAG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	694
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	6 cut(s)	517, 541, 580, 643, 694, 744
BstMAI	GTCTC	4 cut(s)	120, 557, 665, 691
BstMBI	GATC	6 cut(s)	514, 538, 577, 640, 691, 741
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstNI	CCWGG	3 cut(s)	131, 484, 568
BstSCI	CCNGG	4 cut(s)	43, 129, 482, 566
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	461
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	5 cut(s)	59, 69, 101, 624, 729
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	694
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	3 cut(s)	57, 91, 480
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	3 cut(s)	55, 89, 593
Cfr13I	GGNCC	3 cut(s)	68, 99, 728
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	1 cut(s)	647
CsiI	ACCWGGT	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	82, 401, 465
CviAII	CATG	2 cut(s)	699, 739
CviQI	GTAC	3 cut(s)	82, 401, 465
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	6 cut(s)	516, 540, 579, 642, 693, 743
DpnII	GATC	6 cut(s)	514, 538, 577, 640, 691, 741
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
EciI	GGCGGA	1 cut(s)	653
Eco31I	GGTCTC	3 cut(s)	120, 557, 691
Eco47III	AGCGCT	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	3 cut(s)	129, 482, 566
Esp3I	CGTCTC	1 cut(s)	665
FaeI	CATG	2 cut(s)	702, 742
FaiI	YATR	5 cut(s)	117, 300, 474, 700, 740
FalI	AAGNNNNNCTT	6 cut(s)	152, 184, 356, 388, 647, 679
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	2 cut(s)	698, 738
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	421, 450
FokI	GGATG	1 cut(s)	681
Fsp4HI	GCNGC	2 cut(s)	421, 450
FspBI	CTAG	2 cut(s)	275, 536
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	421, 450
GsaI	CCCAGC	2 cut(s)	17, 33
GsuI	CTGGAG	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	5 cut(s)	59, 69, 101, 624, 729
HapII	CCGG	5 cut(s)	45, 56, 90, 594, 621
HgaI	GACGC	1 cut(s)	647
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	702, 742
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	2 cut(s)	444, 673
HindII	GTYRAC	2 cut(s)	444, 673
HinfI	GANTC	9 cut(s)	151, 165, 278, 320, 326, 376, 552, 604, 720
HpaI	GTTAAC	1 cut(s)	444
HpaII	CCGG	5 cut(s)	45, 56, 90, 594, 621
HphI	GGTGA	6 cut(s)	121, 145, 229, 304, 423, 635
Hpy166II	GTNNAC	2 cut(s)	444, 673
Hpy188I	TCNGA	6 cut(s)	292, 319, 325, 519, 582, 691
Hpy188III	TCNNGA	3 cut(s)	160, 562, 739
Hpy8I	GTNNAC	2 cut(s)	444, 673
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	254, 393
HpyCH4V	TGCA	2 cut(s)	449, 702
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	702, 742
HspAI	GCGC	1 cut(s)	39
KroI	GCCGGC	2 cut(s)	55, 89
KroNI	GCCGGC	2 cut(s)	57, 91
KspAI	GTTAAC	1 cut(s)	444
Kzo9I	GATC	6 cut(s)	514, 538, 577, 640, 691, 741
LmnI	GCTCC	4 cut(s)	46, 199, 263, 592
Lsp1109I	GCAGC	1 cut(s)	461
MabI	ACCWGGT	1 cut(s)	129
MaeI	CTAG	2 cut(s)	275, 536
MalI	GATC	6 cut(s)	516, 540, 579, 642, 693, 743
MboI	GATC	6 cut(s)	514, 538, 577, 640, 691, 741
MboII	GAAGA	3 cut(s)	160, 561, 655
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	4 cut(s)	179, 247, 436, 496
MlyI	GAGTC	4 cut(s)	145, 174, 272, 335
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	8 cut(s)	112, 114, 231, 271, 276, 325, 349, 686
MreI	CGCCGGCG	1 cut(s)	89
MroNI	GCCGGC	2 cut(s)	55, 89
MseI	TTAA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	420
MspI	CCGG	5 cut(s)	45, 56, 90, 594, 621
MspR9I	CCNGG	4 cut(s)	45, 131, 484, 568
MvaI	CCWGG	3 cut(s)	131, 484, 568
MwoI	GCNNNNNNNGC	1 cut(s)	45
NaeI	GCCGGC	2 cut(s)	57, 91
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	6 cut(s)	514, 538, 577, 640, 691, 741
NgoMIV	GCCGGC	2 cut(s)	55, 89
NlaIII	CATG	2 cut(s)	702, 742
NlaIV	GGNNCC	2 cut(s)	70, 195
NspV	TTCGAA	1 cut(s)	184
PagI	TCATGA	1 cut(s)	738
PdiI	GCCGGC	2 cut(s)	57, 91
PfeI	GAWTC	5 cut(s)	320, 376, 552, 604, 720
PkrI	GCNGC	2 cut(s)	422, 451
PleI	GAGTC	4 cut(s)	145, 173, 272, 334
PpsI	GAGTC	4 cut(s)	145, 173, 272, 334
Psp6I	CCWGG	3 cut(s)	129, 482, 566
PspFI	CCCAGC	2 cut(s)	13, 29
PspGI	CCWGG	3 cut(s)	129, 482, 566
PspN4I	GGNNCC	2 cut(s)	70, 195
PspPI	GGNCC	3 cut(s)	68, 99, 728
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	3 cut(s)	83, 402, 466
RsaNI	GTAC	3 cut(s)	82, 401, 465
SalI	GTCGAC	1 cut(s)	671
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	2 cut(s)	421, 450
Sau3AI	GATC	6 cut(s)	514, 538, 577, 640, 691, 741
Sau96I	GGNCC	3 cut(s)	68, 99, 728
SchI	GAGTC	4 cut(s)	145, 174, 272, 335
ScrFI	CCNGG	4 cut(s)	45, 131, 484, 568
SduI	GDGCHC	1 cut(s)	589
SexAI	ACCWGGT	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	447
SfuI	TTCGAA	1 cut(s)	184
SgrAI	CRCCGGYG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	179, 247, 436, 496
SsiI	CCGC	3 cut(s)	93, 420, 638
SspMI	CTAG	2 cut(s)	275, 536
StyD4I	CCNGG	4 cut(s)	43, 129, 482, 566
TaaI	ACNGT	2 cut(s)	254, 393
TaqI	TCGA	5 cut(s)	184, 348, 561, 653, 672
TasI	AATT	4 cut(s)	179, 247, 436, 496
TatI	WGTACW	2 cut(s)	81, 400
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	5 cut(s)	320, 376, 552, 604, 720
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	709
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	4 cut(s)	461, 509, 655, 727
TspRI	CASTG	1 cut(s)	709
XapI	RAATTY	2 cut(s)	179, 496
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	2 cut(s)	275, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.