Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003314.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

65311 .. 65652

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgaagaagagaagttacggcaacagaaagccagagagcttgagacttttgatcagcaaaaccatggtgcagtaccgcactacgatgatagaaaccaggaccgggataagtggttttcatggtgcaaatagtgtgaaggtcacttattatgaagaagaggcgcttcggacaatgaaggcatattggctgctttctgctacaccagaagctcctgttaaagtggctgctccccctgaatgcacaacctgtccagaaggaagcgagaaactaaagcggaagtctcttttccctatccatttcactgaaagacacaaacgacgagaagaaatcaacacctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0019538 GO:0019787 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rtf2 zf-NOSIP zf-RING_UBOX

Protein Analysis

113

Amino Acids

13.02

Weight (kDa)

9.8

Isoelectric Point (pI)

65.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	76, 274
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	2 cut(s)	39, 209
AluI	AGCT	2 cut(s)	39, 209
Alw26I	GTCTC	2 cut(s)	37, 285
ApeKI	GCWGC	2 cut(s)	187, 224
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	174, 211
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	97
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	37, 285
BfoI	RGCGCY	1 cut(s)	164
BisI	GCNGC	2 cut(s)	188, 225
BlsI	GCNGC	2 cut(s)	189, 226
Bme1390I	CCNGG	2 cut(s)	97, 103
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	97, 103
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	174, 211
BsgI	GTGCAG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	37, 285
BsmI	GAATGC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	51
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	2 cut(s)	76, 274
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	97
Bst6I	CTCTTC	2 cut(s)	2, 150
BstDSI	CCRYGG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	37, 285
BstMBI	GATC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	95, 101
BstV1I	GCAGC	2 cut(s)	174, 211
BtgI	CCRYGG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	300
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	2 cut(s)	64, 119
CviJI	RGCY	5 cut(s)	31, 39, 187, 209, 224
CviKI_1	RGCY	5 cut(s)	31, 39, 187, 209, 224
CviQI	GTAC	1 cut(s)	73
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	2, 150
EarI	CTCTTC	2 cut(s)	2, 150
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	67, 122
FaiI	YATR	4 cut(s)	65, 120, 150, 181
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	2 cut(s)	63, 118
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	188, 225
Fsp4HI	GCNGC	2 cut(s)	188, 225
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	188, 225
HaeII	RGCGCY	1 cut(s)	164
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	67, 122
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	251, 339
Hpy99I	CGWCG	1 cut(s)	321
HpyAV	CCTTC	3 cut(s)	130, 169, 248
HpyCH4V	TGCA	3 cut(s)	70, 125, 240
Hsp92II	CATG	2 cut(s)	67, 122
HspAI	GCGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	214, 232
LpnPI	CCDG	9 cut(s)	45, 82, 109, 115, 216, 225, 246, 259, 264
Lsp1109I	GCAGC	2 cut(s)	174, 211
MaeIII	GTNAC	2 cut(s)	14, 139
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	5 cut(s)	16, 19, 164, 167, 335
MnlI	CCTC	1 cut(s)	151
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	97, 103
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	97
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	67, 122
NmuCI	GTSAC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	189, 226
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	188, 225
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	97, 103
SetI	ASST	5 cut(s)	41, 141, 211, 248, 338
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SsiI	CCGC	2 cut(s)	76, 274
StyD4I	CCNGG	2 cut(s)	95, 101
StyI	CCWWGG	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	187, 224
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	4 cut(s)	17, 107, 165, 188
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.