Rmu_sc0003332.1_g000012

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003332.1
N/A
Physical Location & Seq
Reverse (-)
61579 .. 62172
594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
atgaggaagcccaccgggagttataagtattttatttacgcagtggaacaaaaagaagtacagttgccatcacactaccaaaaaaaggatgacgagctcgtaatcaatttaaggctctacacgatcattggaaaccggtgtgggattgatgttacctatgatgatagaaacctaaaatcttaccagccgttcctggtcacaccctctcgtatcaggaggaggaggttggcccggtccgtagctaagcgtctttccctcatgaatgtcccggaagatgagcagccagctattgctgtaaaaattttctggtcggttaaaaaggccgttcccagggtgccgattgacgttgccatggcatacgtaactgttttggagacagtgagacctaatagtttggaattagaagctattattaaacagacaccatcatgtgttatttgtatggagctctttggtgatcatcaacgaattattcgcttggcttgctcacactattatcacaaacattgctttgttctgtggctggagataaatgacacttgtcccctctgtcgatgcccaatgccaattgaagaggatgtggaggagccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

197

Amino Acids

23.0

Weight (kDa)

8.58

Isoelectric Point (pI)

64.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 143 - 185 3.7e-13 Ring finger domain
zf-C3HC4_2 PF13923 144 - 184 4e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 144 - 170 2.8e-06 RING-like zinc finger
zf-rbx1 PF12678 152 - 185 5.1e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 300
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 2 cut(s) 85, 330
AgeI ACCGGT 1 cut(s) 135
AgsI TTSAA 1 cut(s) 572
AjnI CCWGG 2 cut(s) 192, 329
AluBI AGCT 5 cut(s) 97, 242, 287, 407, 448
AluI AGCT 5 cut(s) 97, 242, 287, 407, 448
Alw21I GWGCWC 2 cut(s) 99, 450
Alw26I GTCTC 2 cut(s) 368, 376
AoxI GGCC 2 cut(s) 228, 321
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 300
AsiGI ACCGGT 1 cut(s) 135
AspS9I GGNCC 2 cut(s) 229, 234
AsuC2I CCSGG 3 cut(s) 16, 232, 269
AsuHPI GGTGA 1 cut(s) 467
AvaII GGWCC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 334
BanII GRGCYC 2 cut(s) 99, 450
Bbv12I GWGCWC 2 cut(s) 99, 450
BbvI GCAGC 1 cut(s) 292
BccI CCATC 2 cut(s) 76, 433
BceAI ACGGC 2 cut(s) 172, 308
BciT130I CCWGG 2 cut(s) 194, 331
BclI TGATCA 1 cut(s) 457
BcnI CCSGG 3 cut(s) 16, 232, 269
BcoDI GTCTC 2 cut(s) 368, 376
BisI GCNGC 1 cut(s) 281
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 5 cut(s) 16, 194, 232, 269, 331
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 2 cut(s) 229, 234
BmiI GGNNCC 2 cut(s) 336, 588
BmrFI CCNGG 5 cut(s) 16, 194, 232, 269, 331
BmsI GCATC 1 cut(s) 545
BoxI GACNNNNGTC 1 cut(s) 540
BpmI CTGGAG 1 cut(s) 545
Bpu1102I GCTNAGC 1 cut(s) 243
BpuMI CCSGG 3 cut(s) 16, 232, 269
BsaAI YACGTR 1 cut(s) 361
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 3 cut(s) 329, 330, 351
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 330
Bse118I RCCGGY 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 505
BseBI CCWGG 2 cut(s) 194, 331
BseDI CCNNGG 3 cut(s) 329, 330, 351
BseGI GGATG 2 cut(s) 94, 583
BseLI CCNNNNNNNGG 2 cut(s) 85, 330
BseMI GCAATG 1 cut(s) 505
BseRI GAGGAG 2 cut(s) 232, 235
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 2 cut(s) 230, 323
BshNI GGYRCC 1 cut(s) 334
BshTI ACCGGT 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 99, 450
BsiSI CCGG 4 cut(s) 15, 136, 232, 269
BslFI GGGAC 2 cut(s) 251, 528
BslI CCNNNNNNNGG 2 cut(s) 85, 330
BsmAI GTCTC 2 cut(s) 368, 376
BsmFI GGGAC 2 cut(s) 251, 528
BsnI GGCC 2 cut(s) 230, 323
Bso31I GGTCTC 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 99, 450
Bsp143I GATC 2 cut(s) 123, 457
Bsp1720I GCTNAGC 1 cut(s) 243
Bsp19I CCATGG 1 cut(s) 351
BspANI GGCC 2 cut(s) 230, 323
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 336, 588
BspT107I GGYRCC 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 3 cut(s) 329, 330, 351
BssMI GATC 2 cut(s) 123, 457
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 2 cut(s) 194, 331
Bst4CI ACNGT 3 cut(s) 63, 367, 379
Bst6I CTCTTC 1 cut(s) 567
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 285, 484
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 94, 583
BstKTI GATC 2 cut(s) 126, 460
BstMAI GTCTC 2 cut(s) 368, 376
BstMBI GATC 2 cut(s) 123, 457
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstNI CCWGG 2 cut(s) 194, 331
BstPAI GACNNNNGTC 1 cut(s) 540
BstSCI CCNGG 5 cut(s) 14, 192, 230, 267, 329
BstSNI TACGTA 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 230, 323
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 94, 583
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 48, 384
Cac8I GCNNGC 2 cut(s) 285, 484
CciI TCATGA 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 229, 234
CpoI CGGWCCG 1 cut(s) 234
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 59
CspAI ACCGGT 1 cut(s) 135
CspI CGGWCCG 1 cut(s) 234
CviAII CATG 3 cut(s) 259, 352, 429
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 125, 459
DpnII GATC 2 cut(s) 123, 457
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Ecl136II GAGCTC 2 cut(s) 97, 448
Eco105I TACGTA 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 2 cut(s) 99, 450
Eco31I GGTCTC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 234
Eco53kI GAGCTC 2 cut(s) 97, 448
EcoICRI GAGCTC 2 cut(s) 97, 448
EcoRII CCWGG 2 cut(s) 192, 329
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 2 cut(s) 99, 450
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 3 cut(s) 262, 355, 432
FaiI YATR 7 cut(s) 24, 159, 260, 353, 358, 430, 443
FaqI GGGAC 2 cut(s) 251, 528
FatI CATG 3 cut(s) 258, 351, 428
FbaI TGATCA 1 cut(s) 457
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 2 cut(s) 101, 590
FriOI GRGCYC 2 cut(s) 99, 450
Fsp4HI GCNGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 2 cut(s) 230, 323
HapII CCGG 4 cut(s) 15, 136, 232, 269
HgaI GACGC 1 cut(s) 236
Hin1II CATG 3 cut(s) 262, 355, 432
HpaII CCGG 4 cut(s) 15, 136, 232, 269
HphI GGTGA 1 cut(s) 467
Hpy188III TCNNGA 2 cut(s) 214, 259
HpyCH4III ACNGT 3 cut(s) 63, 367, 379
HpyCH4IV ACGT 2 cut(s) 345, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 2 cut(s) 345, 360
Hsp92II CATG 3 cut(s) 262, 355, 432
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 2 cut(s) 123, 457
LmnI GCTCC 2 cut(s) 445, 586
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 545
MaeII ACGT 2 cut(s) 345, 360
MaeIII GTNAC 3 cut(s) 151, 196, 361
MalI GATC 2 cut(s) 125, 459
MboI GATC 2 cut(s) 123, 457
MboII GAAGA 2 cut(s) 284, 584
MfeI CAATTG 1 cut(s) 567
MhlI GDGCHC 2 cut(s) 99, 450
MluCI AATT 5 cut(s) 106, 300, 398, 468, 567
MnlI CCTC 8 cut(s) 210, 213, 214, 216, 266, 557, 568, 577
MseI TTAA 3 cut(s) 110, 315, 414
MslI CAYNNNNRTG 1 cut(s) 427
MspI CCGG 4 cut(s) 15, 136, 232, 269
MspR9I CCNGG 5 cut(s) 16, 194, 232, 269, 331
MunI CAATTG 1 cut(s) 567
MvaI CCWGG 2 cut(s) 194, 331
MwoI GCNNNNNNNGC 1 cut(s) 483
NciI CCSGG 3 cut(s) 16, 232, 269
NcoI CCATGG 1 cut(s) 351
NdeII GATC 2 cut(s) 123, 457
NlaIII CATG 3 cut(s) 262, 355, 432
NlaIV GGNNCC 2 cut(s) 336, 588
NmuCI GTSAC 1 cut(s) 196
PagI TCATGA 1 cut(s) 258
PasI CCCWGGG 1 cut(s) 330
PfoI TCCNGGA 1 cut(s) 267
PinAI ACCGGT 1 cut(s) 135
PkrI GCNGC 1 cut(s) 282
Ppu21I YACGTR 1 cut(s) 361
PshAI GACNNNNGTC 1 cut(s) 540
PsiI TTATAA 1 cut(s) 24
Psp124BI GAGCTC 2 cut(s) 99, 450
Psp6I CCWGG 2 cut(s) 192, 329
PspGI CCWGG 2 cut(s) 192, 329
PspN4I GGNNCC 2 cut(s) 336, 588
PspPI GGNCC 2 cut(s) 229, 234
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 427
Rsr2I CGGWCCG 1 cut(s) 234
RsrII CGGWCCG 1 cut(s) 234
SacI GAGCTC 2 cut(s) 99, 450
SaqAI TTAA 3 cut(s) 110, 315, 414
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 2 cut(s) 123, 457
Sau96I GGNCC 2 cut(s) 229, 234
ScrFI CCNGG 5 cut(s) 16, 194, 232, 269, 331
SduI GDGCHC 2 cut(s) 99, 450
SfaNI GCATC 1 cut(s) 545
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 427
SnaBI TACGTA 1 cut(s) 361
Sse9I AATT 5 cut(s) 106, 300, 398, 468, 567
SstI GAGCTC 2 cut(s) 99, 450
StyD4I CCNGG 5 cut(s) 14, 192, 230, 267, 329
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 3 cut(s) 63, 367, 379
TaiI ACGT 2 cut(s) 348, 363
TaqI TCGA 1 cut(s) 553
TasI AATT 5 cut(s) 106, 300, 398, 468, 567
TatI WGTACW 1 cut(s) 58
Tru1I TTAA 3 cut(s) 110, 315, 414
Tru9I TTAA 3 cut(s) 110, 315, 414
TscAI CASTG 2 cut(s) 48, 384
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 2 cut(s) 48, 384
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.