Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003337.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

30726 .. 31799

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgactctctacggtagaattcaggctattcaggaagaatcgcaacaattctccaatcctaacgaagtagttcgtctagaatccaatgaacaacaaggcaaccaagttgctgacaaattggcttatgttagtgcttctaatacttatgtttcgtggtgggatacttgtcatcaaagtgcccaggctgcctattgccgaaatttatcccgtcacacgaaatttcggtttaccaccaccaaggtccccgttcttctcttcccactgccggccaagtcctccacatccactgctggaatcgccgtcaaggtcgccgccgccgcaccaaaatcgaaggggaaggcgaagcccaaagcagacgccgatgccgacgcgatcaagcccaagagaaacgtcaacaggaacgctgccattctgaagccgactccgatctctccagctctcggcagcttcctcggaggcgcccttgagtgctctcgcgccgaggccgtgaagaagatctggagccacatcaagctccaaaacctgcaggtcgtgatttcgatctcctttgcttcattctctgcgtttataatgatgatgatgatggtgtgtgttgatgaagtgttaaatcactgggttctgaaaaattgtccggtggacctctgcgaacccaaccctcatcgaccaagccctctgaagctccagctcatcgtcttcctcgaagagttctcctcacatccgacctttttgttgctgtgctcccgctctttttgtcgtccggcaacggcgatggtattgtcgtcgttttcgttcccgacgattttgggtcgaggttctccggtaagggcccgtttgggcttgacggtgagaatcgatttctgggtattgaattcgacactgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

294

Amino Acids

32.45

Weight (kDa)

9.67

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	139 - 176	6.4e-08	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
Acc36I	ACCTGC	2 cut(s)	517, 531
AccB1I	GGYRCC	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	744
AccII	CGCG	2 cut(s)	371, 477
AciI	CCGC	4 cut(s)	312, 315, 318, 742
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	4 cut(s)	18, 199, 218, 868
AcuI	CTGAAG	2 cut(s)	434, 695
AcyI	GRCGYC	2 cut(s)	357, 459
AfiI	CCNNNNNNNGG	2 cut(s)	265, 440
AgsI	TTSAA	1 cut(s)	868
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	5 cut(s)	437, 447, 514, 679, 685
AluI	AGCT	5 cut(s)	437, 447, 514, 679, 685
Alw21I	GWGCWC	2 cut(s)	473, 740
AoxI	GGCC	3 cut(s)	267, 483, 825
ApaI	GGGCCC	1 cut(s)	829
ApeKI	GCWGC	3 cut(s)	185, 404, 444
ApoI	RAATTY	4 cut(s)	18, 199, 218, 868
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	2 cut(s)	461, 479
AspS9I	GGNCC	4 cut(s)	241, 637, 825, 826
AsuHPI	GGTGA	1 cut(s)	856
AvaII	GGWCC	2 cut(s)	241, 637
BaeGI	GKGCMC	2 cut(s)	181, 829
BanI	GGYRCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	829
BbsI	GAAGAC	1 cut(s)	685
Bbv12I	GWGCWC	2 cut(s)	473, 740
BbvI	GCAGC	3 cut(s)	172, 391, 456
BccI	CCATC	2 cut(s)	577, 763
BceAI	ACGGC	3 cut(s)	284, 470, 780
BcgI	CGANNNNNNTGC	4 cut(s)	309, 343, 433, 467
BciT130I	CCWGG	1 cut(s)	182
BciVI	GTATCC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	524
BfoI	RGCGCY	1 cut(s)	462
BfuAI	ACCTGC	2 cut(s)	517, 531
BfuI	GTATCC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	495
BisI	GCNGC	6 cut(s)	186, 312, 315, 318, 405, 445
BlsI	GCNGC	6 cut(s)	187, 313, 316, 319, 406, 446
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	2 cut(s)	241, 637
BmgT120I	GGNCC	4 cut(s)	241, 637, 825, 826
BmiI	GGNNCC	4 cut(s)	243, 460, 503, 827
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	685
BplI	GAGNNNNNCTC	2 cut(s)	695, 727
BpmI	CTGGAG	3 cut(s)	417, 520, 665
BpuEI	CTTGAG	1 cut(s)	485
Bsa29I	ATCGAT	1 cut(s)	852
BsaBI	GATNNNNATC	1 cut(s)	539
BsaHI	GRCGYC	2 cut(s)	357, 459
BsaJI	CCNNGG	4 cut(s)	180, 237, 451, 480
BsaWI	WCCGGW	2 cut(s)	631, 817
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 440
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	617
Bse8I	GATNNNNATC	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	852
BseDI	CCNNGG	4 cut(s)	180, 237, 451, 480
BseGI	GGATG	2 cut(s)	281, 715
BseJI	GATNNNNATC	1 cut(s)	539
BseLI	CCNNNNNNNGG	2 cut(s)	265, 440
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	1 cut(s)	700
BseSI	GKGCMC	2 cut(s)	181, 829
BseXI	GCAGC	3 cut(s)	172, 391, 456
Bsh1236I	CGCG	2 cut(s)	371, 477
BshFI	GGCC	3 cut(s)	269, 485, 827
BshNI	GGYRCC	1 cut(s)	458
BshVI	ATCGAT	1 cut(s)	852
BsiHKAI	GWGCWC	2 cut(s)	473, 740
BsiSI	CCGG	4 cut(s)	266, 632, 758, 818
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	265, 440
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	3 cut(s)	269, 485, 827
Bsp120I	GGGCCC	1 cut(s)	825
Bsp1286I	GDGCHC	4 cut(s)	181, 473, 740, 829
Bsp143I	GATC	4 cut(s)	372, 426, 495, 540
BspACI	CCGC	4 cut(s)	312, 315, 318, 742
BspANI	GGCC	3 cut(s)	269, 485, 827
BspDI	ATCGAT	1 cut(s)	852
BspFNI	CGCG	2 cut(s)	371, 477
BspLI	GGNNCC	4 cut(s)	243, 460, 503, 827
BspMAI	CTGCAG	1 cut(s)	528
BspMI	ACCTGC	2 cut(s)	517, 531
BspT107I	GGYRCC	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	617
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	4 cut(s)	180, 237, 451, 480
BssMI	GATC	4 cut(s)	372, 426, 495, 540
BssNI	GRCGYC	2 cut(s)	357, 459
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	14, 844
Bst6I	CTCTTC	2 cut(s)	260, 696
BstACI	GRCGYC	2 cut(s)	357, 459
BstC8I	GCNNGC	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	281, 715
BstFNI	CGCG	2 cut(s)	371, 477
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	2 cut(s)	461, 479
BstKTI	GATC	4 cut(s)	375, 429, 498, 543
BstMBI	GATC	4 cut(s)	372, 426, 495, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 296, 317
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	524
BstSLI	GKGCMC	2 cut(s)	181, 829
BstUI	CGCG	2 cut(s)	371, 477
BstV1I	GCAGC	3 cut(s)	172, 391, 456
BstV2I	GAAGAC	1 cut(s)	685
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
Bsu15I	ATCGAT	1 cut(s)	852
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	269, 485, 827
BsuTUI	ATCGAT	1 cut(s)	852
BtgZI	GCGATG	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	281, 715
BtsI	GCAGTG	2 cut(s)	260, 285
BtsIMutI	CAGTG	4 cut(s)	260, 285, 610, 875
BveI	ACCTGC	2 cut(s)	517, 531
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	2 cut(s)	461, 479
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	4 cut(s)	241, 637, 825, 826
ClaI	ATCGAT	1 cut(s)	852
CseI	GACGC	2 cut(s)	365, 377
DinI	GGCGCC	1 cut(s)	460
DpnI	GATC	4 cut(s)	374, 428, 497, 542
DpnII	GATC	4 cut(s)	372, 426, 495, 540
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	260, 696
EarI	CTCTTC	2 cut(s)	260, 696
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	829
Eco47I	GGWCC	2 cut(s)	241, 637
Eco57I	CTGAAG	2 cut(s)	434, 695
EcoO109I	RGGNCCY	2 cut(s)	241, 825
EcoRI	GAATTC	2 cut(s)	18, 868
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	829
EgeI	GGCGCC	1 cut(s)	460
EheI	GGCGCC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	237
FaiI	YATR	3 cut(s)	126, 147, 569
FaqI	GGGAC	1 cut(s)	227
FauI	CCCGC	1 cut(s)	749
Fnu4HI	GCNGC	6 cut(s)	186, 312, 315, 318, 405, 445
FokI	GGATG	2 cut(s)	268, 702
FriOI	GRGCYC	1 cut(s)	829
Fsp4HI	GCNGC	6 cut(s)	186, 312, 315, 318, 405, 445
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	2 cut(s)	460, 478
GluI	GCNGC	6 cut(s)	186, 312, 315, 318, 405, 445
GsuI	CTGGAG	3 cut(s)	417, 520, 665
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	3 cut(s)	269, 485, 827
HapII	CCGG	4 cut(s)	266, 632, 758, 818
HgaI	GACGC	2 cut(s)	365, 377
HhaI	GCGC	2 cut(s)	461, 479
Hin1I	GRCGYC	2 cut(s)	357, 459
Hin6I	GCGC	2 cut(s)	459, 477
HinP1I	GCGC	2 cut(s)	459, 477
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	6 cut(s)	4, 38, 80, 294, 421, 849
HpaII	CCGG	4 cut(s)	266, 632, 758, 818
HphI	GGTGA	1 cut(s)	856
Hpy166II	GTNNAC	3 cut(s)	228, 394, 637
Hpy188I	TCNGA	6 cut(s)	414, 426, 455, 621, 675, 720
Hpy188III	TCNNGA	5 cut(s)	32, 77, 499, 532, 793
Hpy8I	GTNNAC	3 cut(s)	228, 394, 637
Hpy99I	CGWCG	3 cut(s)	371, 784, 799
HpyAV	CCTTC	2 cut(s)	325, 331
HpyCH4III	ACNGT	2 cut(s)	14, 844
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 296, 317
HpySE526I	ACGT	1 cut(s)	390
Hsp92I	GRCGYC	2 cut(s)	357, 459
HspAI	GCGC	2 cut(s)	459, 477
KasI	GGCGCC	1 cut(s)	458
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	4 cut(s)	372, 426, 495, 540
LmnI	GCTCC	4 cut(s)	501, 519, 684, 743
Lsp1109I	GCAGC	3 cut(s)	172, 391, 456
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	4 cut(s)	374, 428, 497, 542
MbiI	CCGCTC	1 cut(s)	744
MboI	GATC	4 cut(s)	372, 426, 495, 540
MboII	GAAGA	7 cut(s)	47, 242, 247, 502, 505, 685, 713
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	4 cut(s)	181, 473, 740, 829
MluCI	AATT	7 cut(s)	18, 47, 116, 199, 218, 625, 868
Mly113I	GGCGCC	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	743
MroNI	GCCGGC	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	605
MslI	CAYNNNNRTG	2 cut(s)	174, 880
MspI	CCGG	4 cut(s)	266, 632, 758, 818
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	2 cut(s)	371, 477
MwoI	GCNNNNNNNGC	3 cut(s)	185, 296, 317
NaeI	GCCGGC	1 cut(s)	267
NarI	GGCGCC	1 cut(s)	459
NdeII	GATC	4 cut(s)	372, 426, 495, 540
NgoMIV	GCCGGC	1 cut(s)	265
NlaIV	GGNNCC	4 cut(s)	243, 460, 503, 827
NmeAIII	GCCGAG	2 cut(s)	420, 505
NmuCI	GTSAC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	4 cut(s)	363, 696, 785, 794
PdiI	GCCGGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	4 cut(s)	38, 80, 294, 849
PkrI	GCNGC	6 cut(s)	187, 313, 316, 319, 406, 446
PleI	GAGTC	1 cut(s)	415
PluTI	GGCGCC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	4 cut(s)	243, 460, 503, 827
PspOMI	GGGCCC	1 cut(s)	825
PspPI	GGNCC	4 cut(s)	241, 637, 825, 826
PspPPI	RGGWCCY	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	495
RseI	CAYNNNNRTG	2 cut(s)	174, 880
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	6 cut(s)	186, 312, 315, 318, 405, 445
Sau3AI	GATC	4 cut(s)	372, 426, 495, 540
Sau96I	GGNCC	4 cut(s)	241, 637, 825, 826
SbfI	CCTGCAGG	1 cut(s)	528
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	182
SdaI	CCTGCAGG	1 cut(s)	528
SduI	GDGCHC	4 cut(s)	181, 473, 740, 829
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	524
SfoI	GGCGCC	1 cut(s)	460
SinI	GGWCC	2 cut(s)	241, 637
SmiMI	CAYNNNNRTG	2 cut(s)	174, 880
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse8387I	CCTGCAGG	1 cut(s)	528
Sse9I	AATT	7 cut(s)	18, 47, 116, 199, 218, 625, 868
SsiI	CCGC	4 cut(s)	312, 315, 318, 742
SspDI	GGCGCC	1 cut(s)	458
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	14, 844
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	7 cut(s)	329, 539, 661, 699, 808, 852, 872
TasI	AATT	7 cut(s)	18, 47, 116, 199, 218, 625, 868
TauI	GCSGC	3 cut(s)	314, 317, 320
TfiI	GAWTC	4 cut(s)	38, 80, 294, 849
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	4 cut(s)	267, 292, 617, 882
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	3 cut(s)	185, 404, 444
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	3 cut(s)	102, 543, 612
TspRI	CASTG	4 cut(s)	267, 292, 617, 882
VpaK11BI	GGWCC	2 cut(s)	241, 637
XapI	RAATTY	4 cut(s)	18, 199, 218, 868
XbaI	TCTAGA	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.