Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003337.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

57788 .. 60258

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atggtcacgcggtcgcaggagagtcacgggaatgtggattcgcgggggtcgctgcaggtacagcaagcgctggggtgcttaggagttgcagtcgtcgcgcggtcgcgggcgagtcacgggggtagctgcagggatgtcgcgaggctgctgtggagatgtcgtggggccgcgaggaagctgtggggatgcgaggaggctgcggggatgcgaggacactacggagatgtcgcggggtcgttggtgagtcgcggtcgcgagggcagtcattgcagtcctcgacaccgtgagcttccctgttcttttcgacacttccaaagtcgaaaacgtaatgtcctggacggcacttacaagccttcgacatccttcaccagcggctatcgcgtctgcgcctatctcgaccccacagaaccgaaccacgcttctctcaagtgcttcttcttgtctctacttgccaatcgccaccacaagttcatcccactcttccaaaaccacttgtccgacctctttctcaacctggaaactgaaatttcaaaaattggcaaagcaaacttcaacacctcgagcaacaacatgtcctttaatttcgttttctcgctgttctgtggatcagaaagtacttcattgggttccaaagggccgaccctggtggccgtatgggtagcgcggcaacttgcaccgcagatcacactcgggtggcccaagttgctgagctttgctgaagatttgttgttgcacacggccgttgttaaggaaaatgatgggaatgttactttctcggcgttggataagatgactttgaccaagtctgtggtttatgaggctttgaggattgaacctccggttctgttccagtactggaaggccaaggaggatatggtggtccatacccatgatgcagcatttgagatcaagaacggggaaatgatcttcggatatcagccgttcgccatgaaggatccgaagattttcgagaatccagaggagtttgtggggcataggtttgtaggagaaggtgagaaactgttgaagtatgtttattggtcgaatggtcacgagattgatgatccaacggtggagaataagcagtgtgccgggaaggatttggtgttgcttgtgtctaggttaatgttggtagagtttttccttcggtatgacacttgtaccgttgatgtgactacagtttcatcgggtacttcagtgacgttcagaacattgaccaaagcctcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

409

Amino Acids

45.69

Weight (kDa)

8.68

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	248 - 346	5.2e-12	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	46
AclWI	GGATC	4 cut(s)	613, 950, 963, 1058
AcoI	YGGCCR	2 cut(s)	648, 738
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	2 cut(s)	738, 1179
AfaI	GTAC	5 cut(s)	60, 616, 854, 1162, 1192
AfeI	AGCGCT	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	4 cut(s)	531, 553, 833, 1027
AjnI	CCWGG	3 cut(s)	333, 513, 642
AleI	CACNNNNGTG	1 cut(s)	691
AluBI	AGCT	4 cut(s)	126, 178, 289, 711
AluI	AGCT	4 cut(s)	126, 178, 289, 711
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	4 cut(s)	613, 950, 963, 1058
Ama87I	CYCGRG	2 cut(s)	559, 689
Aor51HI	AGCGCT	1 cut(s)	69
AoxI	GGCC	6 cut(s)	165, 635, 648, 695, 738, 861
ApeKI	GCWGC	5 cut(s)	52, 126, 145, 197, 896
ApoI	RAATTY	1 cut(s)	525
Asp700I	GAANNNNTTC	1 cut(s)	965
AspLEI	GCGC	4 cut(s)	70, 100, 389, 664
AspS9I	GGNCC	4 cut(s)	165, 635, 696, 880
AsuC2I	CCSGG	1 cut(s)	1093
AsuHPI	GGTGA	3 cut(s)	253, 358, 1025
AvaI	CYCGRG	2 cut(s)	559, 689
AvaII	GGWCC	1 cut(s)	880
BaeI	ACNNNNGTAYC	4 cut(s)	1144, 1177, 1182, 1215
BamHI	GGATCC	1 cut(s)	955
BauI	CACGAG	1 cut(s)	1052
BbvI	GCAGC	5 cut(s)	39, 113, 132, 184, 908
BccI	CCATC	1 cut(s)	752
BceAI	ACGGC	5 cut(s)	355, 635, 725, 753, 925
BcgI	CGANNNNNNTGC	4 cut(s)	118, 152, 179, 213
BciT130I	CCWGG	3 cut(s)	335, 515, 644
BcnI	CCSGG	1 cut(s)	1093
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	1 cut(s)	1119
BfmI	CTRYAG	3 cut(s)	53, 127, 1176
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	8 cut(s)	53, 127, 146, 168, 198, 373, 665, 897
BlpI	GCTNAGC	1 cut(s)	707
BlsI	GCNGC	8 cut(s)	54, 128, 147, 169, 199, 374, 666, 898
BmcAI	AGTACT	2 cut(s)	616, 854
Bme1390I	CCNGG	4 cut(s)	335, 515, 644, 1093
Bme18I	GGWCC	1 cut(s)	880
BmeT110I	CYCGRG	2 cut(s)	559, 689
BmgT120I	GGNCC	4 cut(s)	165, 635, 696, 880
BmiI	GGNNCC	3 cut(s)	166, 628, 957
BmrFI	CCNGG	4 cut(s)	335, 515, 644, 1093
BmsI	GCATC	3 cut(s)	176, 195, 883
Bpu10I	CCTNAGC	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	1093
BsaJI	CCNNGG	2 cut(s)	642, 864
BsaWI	WCCGGW	1 cut(s)	838
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 145, 175
Bse1I	ACTGG	2 cut(s)	850, 860
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	3 cut(s)	335, 515, 644
BseDI	CCNNGG	2 cut(s)	642, 864
BseGI	GGATG	5 cut(s)	139, 191, 210, 359, 471
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	2 cut(s)	850, 860
BseRI	GAGGAG	2 cut(s)	206, 995
BseX3I	CGGCCG	1 cut(s)	738
BseXI	GCAGC	5 cut(s)	39, 113, 132, 184, 908
BseYI	CCCAGC	1 cut(s)	70
Bsh1285I	CGRYCG	4 cut(s)	14, 104, 253, 741
BshFI	GGCC	6 cut(s)	167, 637, 650, 697, 740, 863
BsiEI	CGRYCG	4 cut(s)	14, 104, 253, 741
BsiHKCI	CYCGRG	2 cut(s)	559, 689
BsiSI	CCGG	2 cut(s)	839, 1092
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	6 cut(s)	167, 637, 650, 697, 740, 863
BsoBI	CYCGRG	2 cut(s)	559, 689
Bsp143I	GATC	6 cut(s)	605, 681, 906, 924, 955, 1063
Bsp1720I	GCTNAGC	1 cut(s)	707
Bsp68I	TCGCGA	2 cut(s)	140, 255
BspANI	GGCC	6 cut(s)	167, 637, 650, 697, 740, 863
BspCNI	CTCAG	1 cut(s)	699
BspLI	GGNNCC	3 cut(s)	166, 628, 957
BspMAI	CTGCAG	2 cut(s)	57, 131
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	4 cut(s)	613, 950, 963, 1058
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	850, 860
BssECI	CCNNGG	2 cut(s)	642, 864
BssMI	GATC	6 cut(s)	605, 681, 906, 924, 955, 1063
BssSI	CACGAG	1 cut(s)	1052
BssT1I	CCWWGG	1 cut(s)	864
Bst2BI	CACGAG	1 cut(s)	1052
Bst2UI	CCWGG	3 cut(s)	335, 515, 644
Bst4CI	ACNGT	5 cut(s)	284, 1023, 1072, 1165, 1180
Bst6I	CTCTTC	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	66, 108
BstDEI	CTNAG	2 cut(s)	79, 707
BstF5I	GGATG	5 cut(s)	139, 191, 210, 359, 471
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	4 cut(s)	70, 100, 389, 664
BstKTI	GATC	6 cut(s)	608, 684, 909, 927, 958, 1066
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	6 cut(s)	605, 681, 906, 924, 955, 1063
BstMCI	CGRYCG	4 cut(s)	14, 104, 253, 741
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 61, 95, 267, 378, 703
BstNI	CCWGG	3 cut(s)	335, 515, 644
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	4 cut(s)	333, 513, 642, 1091
BstSFI	CTRYAG	3 cut(s)	53, 127, 1176
BstV1I	GCAGC	5 cut(s)	39, 113, 132, 184, 908
BstX2I	RGATCY	1 cut(s)	955
BstXI	CCANNNNNNTGG	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	955
BstZI	CGGCCG	1 cut(s)	738
BsuRI	GGCC	6 cut(s)	167, 637, 650, 697, 740, 863
BtsCI	GGATG	5 cut(s)	139, 191, 210, 359, 471
BtsI	GCAGTG	1 cut(s)	1091
BtsIMutI	CAGTG	2 cut(s)	1091, 1203
BtuMI	TCGCGA	2 cut(s)	140, 255
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	66, 108
CfoI	GCGC	4 cut(s)	70, 100, 389, 664
Cfr13I	GGNCC	4 cut(s)	165, 635, 696, 880
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	5 cut(s)	59, 615, 853, 1161, 1191
CviAII	CATG	3 cut(s)	571, 890, 949
CviQI	GTAC	5 cut(s)	59, 615, 853, 1161, 1191
DdeI	CTNAG	2 cut(s)	79, 707
DpnI	GATC	6 cut(s)	607, 683, 908, 926, 957, 1065
DpnII	GATC	6 cut(s)	605, 681, 906, 924, 955, 1063
EaeI	YGGCCR	2 cut(s)	648, 738
EagI	CGGCCG	1 cut(s)	738
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
EclXI	CGGCCG	1 cut(s)	738
Eco130I	CCWWGG	1 cut(s)	864
Eco32I	GATATC	1 cut(s)	935
Eco47I	GGWCC	1 cut(s)	880
Eco47III	AGCGCT	1 cut(s)	69
Eco52I	CGGCCG	1 cut(s)	738
Eco57I	CTGAAG	2 cut(s)	738, 1179
Eco88I	CYCGRG	2 cut(s)	559, 689
EcoRII	CCWGG	3 cut(s)	333, 513, 642
EcoRV	GATATC	1 cut(s)	935
EcoT14I	CCWWGG	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	3 cut(s)	574, 893, 952
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FatI	CATG	3 cut(s)	570, 889, 948
FauI	CCCGC	4 cut(s)	36, 99, 193, 223
Fnu4HI	GCNGC	8 cut(s)	53, 127, 146, 168, 198, 373, 665, 897
FokI	GGATG	5 cut(s)	146, 198, 217, 346, 458
Fsp4HI	GCNGC	8 cut(s)	53, 127, 146, 168, 198, 373, 665, 897
FspBI	CTAG	1 cut(s)	1119
GlaI	GCGC	4 cut(s)	69, 99, 388, 663
GluI	GCNGC	8 cut(s)	53, 127, 146, 168, 198, 373, 665, 897
GsaI	CCCAGC	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	6 cut(s)	167, 637, 650, 697, 740, 863
HapII	CCGG	2 cut(s)	839, 1092
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	4 cut(s)	70, 100, 389, 664
Hin1II	CATG	3 cut(s)	574, 893, 952
Hin6I	GCGC	4 cut(s)	68, 98, 387, 662
HinP1I	GCGC	4 cut(s)	68, 98, 387, 662
HinfI	GANTC	5 cut(s)	22, 38, 112, 244, 973
HpaII	CCGG	2 cut(s)	839, 1092
HphI	GGTGA	3 cut(s)	253, 358, 1025
Hpy188I	TCNGA	5 cut(s)	499, 610, 932, 960, 1208
Hpy188III	TCNNGA	8 cut(s)	139, 254, 395, 910, 970, 977, 1052, 1227
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	7 cut(s)	363, 373, 853, 946, 1004, 1090, 1154
HpyCH4III	ACNGT	5 cut(s)	284, 1023, 1072, 1165, 1180
HpyCH4IV	ACGT	2 cut(s)	325, 1202
HpyCH4V	TGCA	7 cut(s)	55, 89, 129, 270, 674, 733, 896
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 61, 95, 267, 378, 703
HpyF3I	CTNAG	2 cut(s)	79, 707
HpySE526I	ACGT	2 cut(s)	325, 1202
Hsp92II	CATG	3 cut(s)	574, 893, 952
HspAI	GCGC	4 cut(s)	68, 98, 387, 662
Kzo9I	GATC	6 cut(s)	605, 681, 906, 924, 955, 1063
Lsp1109I	GCAGC	5 cut(s)	39, 113, 132, 184, 908
LweI	GCATC	3 cut(s)	176, 195, 883
MaeI	CTAG	1 cut(s)	1119
MaeII	ACGT	2 cut(s)	325, 1202
MaeIII	GTNAC	7 cut(s)	4, 23, 113, 766, 1049, 1171, 1198
MalI	GATC	6 cut(s)	607, 683, 908, 926, 957, 1065
MboI	GATC	6 cut(s)	605, 681, 906, 924, 955, 1063
MboII	GAAGA	5 cut(s)	427, 472, 731, 919, 973
MflI	RGATCY	1 cut(s)	955
MluCI	AATT	3 cut(s)	525, 534, 580
MlyI	GAGTC	3 cut(s)	31, 121, 253
MmeI	TCCRAC	3 cut(s)	522, 762, 1091
MroXI	GAANNNNTTC	1 cut(s)	965
MseI	TTAA	3 cut(s)	579, 747, 1124
MslI	CAYNNNNRTG	3 cut(s)	30, 691, 888
MspA1I	CMGCKG	1 cut(s)	372
MspI	CCGG	2 cut(s)	839, 1092
MspR9I	CCNGG	4 cut(s)	335, 515, 644, 1093
MvaI	CCWGG	3 cut(s)	335, 515, 644
MwoI	GCNNNNNNNGC	6 cut(s)	49, 61, 95, 267, 378, 703
NciI	CCSGG	1 cut(s)	1093
NdeII	GATC	6 cut(s)	605, 681, 906, 924, 955, 1063
NlaIII	CATG	3 cut(s)	574, 893, 952
NlaIV	GGNNCC	3 cut(s)	166, 628, 957
NmeAIII	GCCGAG	1 cut(s)	755
NmuCI	GTSAC	6 cut(s)	4, 23, 113, 1049, 1171, 1198
NruI	TCGCGA	2 cut(s)	140, 255
NspI	RCATGY	1 cut(s)	574
OliI	CACNNNNGTG	1 cut(s)	691
PaeR7I	CTCGAG	1 cut(s)	559
PciI	ACATGT	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	2 cut(s)	38, 973
PflFI	GACNNNGTC	1 cut(s)	802
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	8 cut(s)	54, 128, 147, 169, 199, 374, 666, 898
PleI	GAGTC	3 cut(s)	30, 120, 252
PpsI	GAGTC	3 cut(s)	30, 120, 252
PscI	ACATGT	1 cut(s)	570
Psp6I	CCWGG	3 cut(s)	333, 513, 642
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	3 cut(s)	333, 513, 642
PspN4I	GGNNCC	3 cut(s)	166, 628, 957
PspPI	GGNCC	4 cut(s)	165, 635, 696, 880
PspXI	VCTCGAGB	1 cut(s)	559
PstI	CTGCAG	2 cut(s)	57, 131
PsuI	RGATCY	1 cut(s)	955
PsyI	GACNNNGTC	1 cut(s)	802
RruI	TCGCGA	2 cut(s)	140, 255
RsaI	GTAC	5 cut(s)	60, 616, 854, 1162, 1192
RsaNI	GTAC	5 cut(s)	59, 615, 853, 1161, 1191
RseI	CAYNNNNRTG	3 cut(s)	30, 691, 888
SaqAI	TTAA	3 cut(s)	579, 747, 1124
SatI	GCNGC	8 cut(s)	53, 127, 146, 168, 198, 373, 665, 897
Sau3AI	GATC	6 cut(s)	605, 681, 906, 924, 955, 1063
Sau96I	GGNCC	4 cut(s)	165, 635, 696, 880
ScaI	AGTACT	2 cut(s)	616, 854
SchI	GAGTC	3 cut(s)	31, 121, 253
ScrFI	CCNGG	4 cut(s)	335, 515, 644, 1093
SfaNI	GCATC	3 cut(s)	176, 195, 883
SfcI	CTRYAG	3 cut(s)	53, 127, 1176
Sfr274I	CTCGAG	1 cut(s)	559
SinI	GGWCC	1 cut(s)	880
SlaI	CTCGAG	1 cut(s)	559
SmiMI	CAYNNNNRTG	3 cut(s)	30, 691, 888
SmlI	CTYRAG	2 cut(s)	425, 559
SmoI	CTYRAG	2 cut(s)	425, 559
Sse9I	AATT	3 cut(s)	525, 534, 580
SspMI	CTAG	1 cut(s)	1119
StyD4I	CCNGG	4 cut(s)	333, 513, 642, 1091
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	5 cut(s)	284, 1023, 1072, 1165, 1180
TaiI	ACGT	2 cut(s)	328, 1205
TaqI	TCGA	8 cut(s)	277, 304, 319, 356, 396, 560, 969, 1043
TasI	AATT	3 cut(s)	525, 534, 580
TatI	WGTACW	2 cut(s)	614, 852
TauI	GCSGC	3 cut(s)	170, 375, 667
TfiI	GAWTC	2 cut(s)	38, 973
Tru1I	TTAA	3 cut(s)	579, 747, 1124
Tru9I	TTAA	3 cut(s)	579, 747, 1124
TscAI	CASTG	2 cut(s)	1091, 1203
TseFI	GTSAC	6 cut(s)	4, 23, 113, 1049, 1171, 1198
TseI	GCWGC	5 cut(s)	52, 126, 145, 197, 896
Tsp45I	GTSAC	6 cut(s)	4, 23, 113, 1049, 1171, 1198
TspDTI	ATGAA	4 cut(s)	460, 609, 965, 1173
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	2 cut(s)	1091, 1203
Tth111I	GACNNNGTC	1 cut(s)	802
VpaK11BI	GGWCC	1 cut(s)	880
XapI	RAATTY	1 cut(s)	525
XceI	RCATGY	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	871
XhoI	CTCGAG	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	1 cut(s)	1119
ZrmI	AGTACT	2 cut(s)	616, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.