Rmu_sc0003337.1_g000024

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003337.1
N/A
Physical Location & Seq
Reverse (-)
63374 .. 63664
291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
atgcctgatgtgtttactgatatcgtaagagtgaggagatcacatacactagctgcaaatgtgcctgcaagggtagaagtccccaacaaggggcacgacgccgtagatagaggcactacaaccacactttgtggaggtgtagttgaggccatggctccccaaaggaagagggggaggccacttggtttgactaacactcacccaaggaagaagagggcgagtaaagcacaaatcgatccattaatcataaatctagagaatccctctcataagattgtctctaatttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

96

Amino Acids

10.54

Weight (kDa)

10.88

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 230
AcyI GRCGYC 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 3 cut(s) 88, 89, 90
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 230
AoxI GGCC 2 cut(s) 147, 176
ApeKI GCWGC 1 cut(s) 53
AseI ATTAAT 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 2 cut(s) 50, 254
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 248, 280
Bsa29I ATCGAT 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 150, 203
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 89, 90
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 150, 203
BseLI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BseRI GAGGAG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 2 cut(s) 149, 178
BshVI ATCGAT 1 cut(s) 234
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 2 cut(s) 149, 178
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 38, 235
Bsp19I CCATGG 1 cut(s) 150
BspANI GGCC 2 cut(s) 149, 178
BspDI ATCGAT 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 150, 203
BssMI GATC 2 cut(s) 38, 235
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 150, 203
Bst6I CTCTTC 2 cut(s) 161, 206
BstACI GRCGYC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 150
BstKTI GATC 2 cut(s) 41, 238
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 38, 235
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 40
Bsu15I ATCGAT 1 cut(s) 234
BsuRI GGCC 2 cut(s) 149, 178
BsuTUI ATCGAT 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 234
CseI GACGC 1 cut(s) 107
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 1 cut(s) 151
CviJI RGCY 4 cut(s) 53, 149, 155, 178
CviKI_1 RGCY 4 cut(s) 53, 149, 155, 178
DpnI GATC 2 cut(s) 40, 237
DpnII GATC 2 cut(s) 38, 235
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 161, 206
EarI CTCTTC 2 cut(s) 161, 206
Eco130I CCWWGG 2 cut(s) 150, 203
Eco32I GATATC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 150, 203
ErhI CCWWGG 2 cut(s) 150, 203
FaeI CATG 1 cut(s) 154
FaiI YATR 4 cut(s) 45, 152, 248, 270
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 50, 254
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 149, 178
HgaI GACGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 154
HinfI GANTC 1 cut(s) 259
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 56, 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 154
Kzo9I GATC 2 cut(s) 38, 235
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 2 cut(s) 18, 78
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 2 cut(s) 50, 254
MalI GATC 2 cut(s) 40, 237
MboI GATC 2 cut(s) 38, 235
MboII GAAGA 3 cut(s) 178, 220, 223
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 283
MnlI CCTC 8 cut(s) 27, 104, 128, 139, 162, 168, 207, 274
MseI TTAA 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 224
NcoI CCATGG 1 cut(s) 150
NdeII GATC 2 cut(s) 38, 235
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 38, 235
SduI GDGCHC 1 cut(s) 96
SetI ASST 2 cut(s) 55, 139
Sse9I AATT 1 cut(s) 283
SspMI CTAG 2 cut(s) 50, 254
StyI CCWWGG 2 cut(s) 150, 203
TaqI TCGA 1 cut(s) 234
TasI AATT 1 cut(s) 283
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseI GCWGC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 242
XbaI TCTAGA 1 cut(s) 253
XspI CTAG 2 cut(s) 50, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.