Rmu_sc0003337.1_g000026

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003337.1
N/A
Physical Location & Seq
Reverse (-)
65953 .. 66315
363 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ctgtgggatgcctttaaaggaagttttgagaacattcatgacactttgctcccagaactaaccgttcagtggaatgaaatctgtttgcttgactacaaaatggtcaatgacttcaaaaaggaaatgttgcgcctaaaggcacgtctcaatttatgtggaagggaactcacagaagatgatacgatccagaagactctttctacttttcctacttcagcacttatactagcgaatcagtataggctggagtatgacaacaaaagaatcacaaccttcaataagcttatcaacctactgcaagtggctaagaggcataatgaggttcttttgaacaacaatgtcaggcctgttaggacaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

14.18

Weight (kDa)

8.96

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 3 cut(s) 115, 277, 331
AjiI CACGTC 1 cut(s) 143
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 178
AoxI GGCC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 69
BshFI GGCC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 346
Bsp143I GATC 1 cut(s) 183
BspANI GGCC 1 cut(s) 346
BspHI TCATGA 1 cut(s) 37
BspPI GGATC 1 cut(s) 178
BssMI GATC 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 346
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 74
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 132
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 1 cut(s) 38
CviJI RGCY 4 cut(s) 244, 283, 305, 346
CviKI_1 RGCY 4 cut(s) 244, 283, 305, 346
DdeI CTNAG 1 cut(s) 306
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
DraI TTTAAA 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 1 cut(s) 41
FaiI YATR 6 cut(s) 39, 154, 224, 240, 252, 315
FatI CATG 1 cut(s) 37
FokI GGATG 1 cut(s) 20
FspBI CTAG 1 cut(s) 227
GlaI GCGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 346
HhaI GCGC 1 cut(s) 132
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 193, 232, 264
Hpy188III TCNNGA 2 cut(s) 38, 187
HpyAV CCTTC 2 cut(s) 153, 283
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 298
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 66, 200, 230, 328
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 142
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 2 cut(s) 185, 202
MluCI AATT 1 cut(s) 148
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 2 cut(s) 303, 313
MseI TTAA 1 cut(s) 15
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 41
PagI TCATGA 1 cut(s) 37
PceI AGGCCT 1 cut(s) 346
PfeI GAWTC 2 cut(s) 232, 264
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 1 cut(s) 183
SchI GAGTC 1 cut(s) 187
SetI ASST 5 cut(s) 145, 275, 285, 294, 324
Sse9I AATT 1 cut(s) 148
SseBI AGGCCT 1 cut(s) 346
SspMI CTAG 1 cut(s) 227
StuI AGGCCT 1 cut(s) 346
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 145
TasI AATT 1 cut(s) 148
TfiI GAWTC 2 cut(s) 232, 264
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 26, 90
TspRI CASTG 1 cut(s) 74
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.