Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003356.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15628 .. 16254

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgcgtgggagaagccttgtgtcgtggaatgttatgattgattctttggttggggctggcgagtttgagagttcgctcaaagtgtttggtcagatgcagaggctgtttgagcctgatgggtatacaatgcagtgtgttataaatgcttgggctagtttgggggctttggatttgggaatgtgggctcacgcttatgtgttgaggaagtgtgataatgctgtagccaccaacgtgttggtgaactcttcgttggttgatatgtattgcaaatgtgggtccttggatatggctctccaagtgtttgagggaatgaataaacgtgatgtgattacatggaattatatgattctgggatttgccatgcatggaaaagctgaggcagctttaaagtgttttgatcgtatggttaatatggagagttgtaggccaaattcaatcgcattcgttggtgttttgagtgcatgcagtcgcaggggcatggttaacgaaggtcttaagttctttgatgtgatggtaaaagagtacaagattgaaccgcgactagagcactatgggtgcctagttgatcttcttgcacgtgctggtttcattgacgaagctttgaatttggtgacaacaatgccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

208

Amino Acids

23.23

Weight (kDa)

5.93

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	5 - 49	7.2e-07	PPR repeat family
PPR_2	PF13041	107 - 156	9.9e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	122
AccII	CGCG	1 cut(s)	538
AciI	CCGC	1 cut(s)	536
AcsI	RAATTY	2 cut(s)	430, 604
AcvI	CACGTG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	524
AflII	CTTAAG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	435, 533, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	374, 383, 599
AluI	AGCT	3 cut(s)	374, 383, 599
Alw21I	GWGCWC	1 cut(s)	549
AlwNI	CAGNNNCTG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	2 cut(s)	430, 604
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	250, 622
AvaII	GGWCC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	187
BbrPI	CACGTG	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	549
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	2 cut(s)	110, 505
BceAI	ACGGC	1 cut(s)	607
BfaI	CTAG	3 cut(s)	153, 542, 560
BfmI	CTRYAG	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	494
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	277, 557
BmsI	GCATC	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	538
BshFI	GGCC	1 cut(s)	427
BshNI	GGYRCC	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	187, 549
Bsp143I	GATC	2 cut(s)	397, 565
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	277, 557
BspT107I	GGYRCC	1 cut(s)	555
BspTI	CTTAAG	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	397, 565
BssNAI	GTATAC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	58, 463
BstDEI	CTNAG	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	538
BstKTI	GATC	2 cut(s)	400, 568
BstMBI	GATC	2 cut(s)	397, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 380, 544
BstNSI	RCATGY	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	392
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstZ17I	GTATAC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	58, 463
CaiI	CAGNNNCTG	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	5 cut(s)	333, 361, 365, 462, 478
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	2 cut(s)	399, 567
DpnII	GATC	2 cut(s)	397, 565
DraI	TTTAAA	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	276
Eco72I	CACGTG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	5 cut(s)	336, 364, 368, 465, 481
FatI	CATG	5 cut(s)	332, 360, 364, 461, 477
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	381
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	3 cut(s)	153, 542, 560
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	427
Hin1II	CATG	5 cut(s)	336, 364, 368, 465, 481
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	2 cut(s)	41, 346
HpaI	GTTAAC	1 cut(s)	484
HphI	GGTGA	2 cut(s)	250, 622
Hpy166II	GTNNAC	3 cut(s)	123, 241, 484
Hpy188I	TCNGA	1 cut(s)	93
Hpy8I	GTNNAC	3 cut(s)	123, 241, 484
HpyAV	CCTTC	1 cut(s)	482
HpyCH4IV	ACGT	3 cut(s)	231, 319, 577
HpyCH4V	TGCA	7 cut(s)	97, 130, 267, 364, 461, 465, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 380, 544
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	3 cut(s)	231, 319, 577
Hsp92II	CATG	5 cut(s)	336, 364, 368, 465, 481
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	397, 565
LpnPI	CCDG	5 cut(s)	42, 126, 335, 457, 567
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	3 cut(s)	153, 542, 560
MaeII	ACGT	3 cut(s)	231, 319, 577
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	2 cut(s)	399, 567
MboI	GATC	2 cut(s)	397, 565
MboII	GAAGA	2 cut(s)	237, 560
MhlI	GDGCHC	2 cut(s)	187, 549
MluCI	AATT	3 cut(s)	337, 430, 604
MnlI	CCTC	4 cut(s)	93, 195, 298, 370
Mph1103I	ATGCAT	1 cut(s)	366
MseI	TTAA	4 cut(s)	386, 408, 483, 495
MslI	CAYNNNNRTG	2 cut(s)	192, 230
MspCI	CTTAAG	1 cut(s)	494
Mva1269I	GAATGC	1 cut(s)	440
MvnI	CGCG	1 cut(s)	538
MwoI	GCNNNNNNNGC	3 cut(s)	109, 380, 544
NdeII	GATC	2 cut(s)	397, 565
NlaIII	CATG	5 cut(s)	336, 364, 368, 465, 481
NlaIV	GGNNCC	2 cut(s)	277, 557
NmuCI	GTSAC	1 cut(s)	610
NsiI	ATGCAT	1 cut(s)	366
NspI	RCATGY	1 cut(s)	465
OliI	CACNNNNGTG	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	465
PctI	GAATGC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	41, 346
PkrI	GCNGC	1 cut(s)	382
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
Ppu21I	YACGTR	1 cut(s)	578
PpuMI	RGGWCCY	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	276
PspCI	CACGTG	1 cut(s)	578
PspN4I	GGNNCC	2 cut(s)	277, 557
PspPI	GGNCC	1 cut(s)	276
PspPPI	RGGWCCY	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	2 cut(s)	192, 230
SaqAI	TTAA	4 cut(s)	386, 408, 483, 495
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	2 cut(s)	397, 565
Sau96I	GGNCC	1 cut(s)	276
SduI	GDGCHC	2 cut(s)	187, 549
SetI	ASST	7 cut(s)	234, 322, 376, 385, 493, 580, 601
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	192, 230
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	3 cut(s)	337, 430, 604
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	3 cut(s)	153, 542, 560
StyI	CCWWGG	1 cut(s)	279
TaiI	ACGT	3 cut(s)	234, 322, 580
TasI	AATT	3 cut(s)	337, 430, 604
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	2 cut(s)	41, 346
Tru1I	TTAA	4 cut(s)	386, 408, 483, 495
Tru9I	TTAA	4 cut(s)	386, 408, 483, 495
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	2 cut(s)	326, 577
TspRI	CASTG	1 cut(s)	137
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	2 cut(s)	430, 604
XceI	RCATGY	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	3 cut(s)	153, 542, 560
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.