Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003361.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 835

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

gagattgacaaatcaactccgaagttcttttcacattgggatccagactccaaaatgttcacgttgcagctatatttcaaagttaagccaccagagacgaacaaacctcagcctcccccaacagccaatggcacaggtgctcctggagttccttcaaggcctctacccccaccaccccaaggtccacctcctcctcctccccaaggaatggcgcctggtgcacctatgggaaaccctcctagggctccaccacctattcctgggtccttactgccacctcctcctatggtaaatggtcctaggcctatgcctcctggtggggctccacctgcccctcctccacctcctgtcggcaataacacaatggtgaatttcactcctggtacccagatgggtaggccaccgactatgccacctccaccccaaggcttccaaggacaacagatgcagggccagggtcttcgtcctcctcctccacctcctagcatgggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

164

Amino Acids

17.01

Weight (kDa)

10.36

Isoelectric Point (pI)

76.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	337
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	2 cut(s)	211, 383
AccB7I	CCANNNNNTGG	1 cut(s)	208
AclWI	GGATC	2 cut(s)	35, 48
AcsI	RAATTY	1 cut(s)	370
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	9 cut(s)	179, 203, 208, 241, 260, 317, 350, 425, 488
AgsI	TTSAA	2 cut(s)	79, 156
AjnI	CCWGG	6 cut(s)	142, 214, 259, 313, 379, 453
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	2 cut(s)	142, 223
Alw26I	GTCTC	1 cut(s)	89
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	35, 48
AoxI	GGCC	4 cut(s)	158, 302, 398, 451
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	370
Asp718I	GGTACC	1 cut(s)	383
AspA2I	CCTAGG	2 cut(s)	239, 299
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	4 cut(s)	182, 264, 296, 451
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	3 cut(s)	182, 264, 296
AvrII	CCTAGG	2 cut(s)	239, 299
BaeGI	GKGCMC	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	40
BanI	GGYRCC	2 cut(s)	211, 383
BanII	GRGCYC	2 cut(s)	247, 325
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	2 cut(s)	142, 223
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	6 cut(s)	144, 216, 261, 315, 381, 455
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	3 cut(s)	240, 300, 483
BfoI	RGCGCY	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	1 cut(s)	68
BlnI	CCTAGG	2 cut(s)	239, 299
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	6 cut(s)	144, 216, 261, 315, 381, 455
Bme18I	GGWCC	3 cut(s)	182, 264, 296
BmgT120I	GGNCC	4 cut(s)	182, 264, 296, 451
BmiI	GGNNCC	6 cut(s)	42, 213, 246, 265, 324, 385
BmrFI	CCNGG	6 cut(s)	144, 216, 261, 315, 381, 455
BmsI	GCATC	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	8 cut(s)	178, 202, 239, 260, 299, 424, 433, 454
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	9 cut(s)	179, 203, 208, 241, 260, 317, 350, 425, 488
BseBI	CCWGG	6 cut(s)	144, 216, 261, 315, 381, 455
BseDI	CCNNGG	8 cut(s)	178, 202, 239, 260, 299, 424, 433, 454
BseLI	CCNNNNNNNGG	9 cut(s)	179, 203, 208, 241, 260, 317, 350, 425, 488
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	7 cut(s)	180, 183, 186, 270, 327, 459, 462
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	4 cut(s)	160, 304, 400, 453
BshNI	GGYRCC	2 cut(s)	211, 383
BsiHKAI	GWGCWC	2 cut(s)	142, 223
BslI	CCNNNNNNNGG	9 cut(s)	179, 203, 208, 241, 260, 317, 350, 425, 488
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
BsnI	GGCC	4 cut(s)	160, 304, 400, 453
Bsp1286I	GDGCHC	4 cut(s)	142, 223, 247, 325
Bsp143I	GATC	1 cut(s)	40
BspANI	GGCC	4 cut(s)	160, 304, 400, 453
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	6 cut(s)	42, 213, 246, 265, 324, 385
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	35, 48
BspT107I	GGYRCC	2 cut(s)	211, 383
BssECI	CCNNGG	8 cut(s)	178, 202, 239, 260, 299, 424, 433, 454
BssMI	GATC	1 cut(s)	40
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	6 cut(s)	178, 202, 239, 299, 424, 433
Bst2UI	CCWGG	6 cut(s)	144, 216, 261, 315, 381, 455
BstACI	GRCGYC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	108
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 329
BstNI	CCWGG	6 cut(s)	144, 216, 261, 315, 381, 455
BstSCI	CCNGG	6 cut(s)	142, 214, 259, 313, 379, 453
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	4 cut(s)	160, 304, 400, 453
BveI	ACCTGC	1 cut(s)	337
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	4 cut(s)	182, 264, 296, 451
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	1 cut(s)	487
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	1 cut(s)	108
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco130I	CCWWGG	6 cut(s)	178, 202, 239, 299, 424, 433
Eco147I	AGGCCT	2 cut(s)	160, 304
Eco24I	GRGCYC	2 cut(s)	247, 325
Eco47I	GGWCC	3 cut(s)	182, 264, 296
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRII	CCWGG	6 cut(s)	142, 214, 259, 313, 379, 453
EcoT14I	CCWWGG	6 cut(s)	178, 202, 239, 299, 424, 433
EcoT38I	GRGCYC	2 cut(s)	247, 325
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
ErhI	CCWWGG	6 cut(s)	178, 202, 239, 299, 424, 433
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	1 cut(s)	490
FaiI	YATR	6 cut(s)	73, 227, 287, 308, 410, 488
FatI	CATG	1 cut(s)	486
Fnu4HI	GCNGC	1 cut(s)	68
FriOI	GRGCYC	2 cut(s)	247, 325
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	3 cut(s)	240, 300, 483
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	4 cut(s)	160, 304, 400, 453
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	490
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	3 cut(s)	60, 185, 221
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	3 cut(s)	60, 185, 221
HpyAV	CCTTC	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	67, 221, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 329
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	490
HspAI	GCGC	1 cut(s)	212
KasI	GGCGCC	1 cut(s)	211
KpnI	GGTACC	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	145, 250, 328
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	3 cut(s)	240, 300, 483
MaeII	ACGT	1 cut(s)	62
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	452
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	4 cut(s)	142, 223, 247, 325
MluCI	AATT	1 cut(s)	370
Mly113I	GGCGCC	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	41
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	365
MspR9I	CCNGG	6 cut(s)	144, 216, 261, 315, 381, 455
MvaI	CCWGG	6 cut(s)	144, 216, 261, 315, 381, 455
MwoI	GCNNNNNNNGC	2 cut(s)	218, 329
NarI	GGCGCC	1 cut(s)	212
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	490
NlaIV	GGNNCC	6 cut(s)	42, 213, 246, 265, 324, 385
OliI	CACNNNNGTG	1 cut(s)	365
PaqCI	CACCTGC	1 cut(s)	337
PceI	AGGCCT	2 cut(s)	160, 304
PflMI	CCANNNNNTGG	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	41
PluTI	GGCGCC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	264
Psp6I	CCWGG	6 cut(s)	142, 214, 259, 313, 379, 453
PspGI	CCWGG	6 cut(s)	142, 214, 259, 313, 379, 453
PspN4I	GGNNCC	6 cut(s)	42, 213, 246, 265, 324, 385
PspPI	GGNCC	4 cut(s)	182, 264, 296, 451
PspPPI	RGGWCCY	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	4 cut(s)	182, 264, 296, 451
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	6 cut(s)	144, 216, 261, 315, 381, 455
SduI	GDGCHC	4 cut(s)	142, 223, 247, 325
SfaNI	GCATC	1 cut(s)	435
SfoI	GGCGCC	1 cut(s)	213
SinI	GGWCC	3 cut(s)	182, 264, 296
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	1 cut(s)	370
SseBI	AGGCCT	2 cut(s)	160, 304
SspDI	GGCGCC	1 cut(s)	211
SspMI	CTAG	3 cut(s)	240, 300, 483
StuI	AGGCCT	2 cut(s)	160, 304
StyD4I	CCNGG	6 cut(s)	142, 214, 259, 313, 379, 453
StyI	CCWWGG	6 cut(s)	178, 202, 239, 299, 424, 433
TaiI	ACGT	1 cut(s)	65
TasI	AATT	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	3 cut(s)	182, 264, 296
XagI	CCTNNNNNAGG	1 cut(s)	201
XapI	RAATTY	1 cut(s)	370
XmaJI	CCTAGG	2 cut(s)	239, 299
XspI	CTAG	3 cut(s)	240, 300, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.