Rmu_sc0003383.1_g000009

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003383.1
N/A
Physical Location & Seq
Reverse (-)
21056 .. 24642
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 927 bp
atggtcggaaaagtcgtcgtcggaagtactgtagctgccgaagttactgtagatgaccggaaagtcaccggagttggccggaaaattcgcaggaaagtggttggaaaagtggccggaaaagtgcccggaaagtggccggaagtcggccgaaaagtcaccggcggtgcgtcttcaggcggccggttaggatgtttcctggccggttccggtgaggttttttccggttcccggaatctggggacaaggtgcagatgctatcaaaagatggcagttgattccggcggccggttcaggttgattccggctggttctgggggcagcgccgccggttccggactcctggaggtgagagcttcaaggtgggtggcggtgttgggtccgttcttggcggagtactcgacgagcttgtcgatccgtatgtggacggaggaccagccacaggaggagggtcagcgtggaaaggcggggggacgaggggagggggaaggtgcggagcaaaggccgggggagggggtaagtggtgagggtgaggtgacggcgcgtgagagagaacctgcgacagcggttgctgctgcaagtgggggtggtaggggaattgctggaggggtgggtgtgggtgtgggtgtgggcaaggttttaaatatcgagtgctccctcttcggaaacctaaaccagagaaagctcataataaactccgatgaggttccgggcactccgtttttcgaagccttcgtagaaatgtcgatgcaggctttgcttctacactacttggccttctcgttcggtcaacaagtctcgatctttcaggtcaacaaaaaccgcagattttcagaggtgttcatggagtccgtcactgtaacgaagcttcaccgtcgtgccggggttcagaatggagaagaatgtgtttcaaagcctagtctactttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

308

Amino Acids

32.26

Weight (kDa)

9.67

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 62, 406
Acc36I ACCTGC 1 cut(s) 562
AccI GTMKAC 1 cut(s) 919
AccII CGCG 1 cut(s) 541
AccIII TCCGGA 1 cut(s) 332
AclWI GGATC 1 cut(s) 406
AcoI YGGCCR 7 cut(s) 76, 111, 134, 145, 178, 198, 283
AcsI RAATTY 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 2 cut(s) 28, 395
AfiI CCNNNNNNNGG 7 cut(s) 132, 143, 228, 235, 285, 439, 509
AgsI TTSAA 2 cut(s) 357, 909
AjnI CCWGG 2 cut(s) 195, 339
AleI CACNNNNGTG 1 cut(s) 873
AluBI AGCT 5 cut(s) 35, 353, 405, 682, 865
AluI AGCT 5 cut(s) 35, 353, 405, 682, 865
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 1 cut(s) 799
AlwI GGATC 1 cut(s) 406
Aor13HI TCCGGA 1 cut(s) 332
AoxI GGCC 9 cut(s) 76, 111, 134, 145, 178, 198, 283, 500, 771
ApeKI GCWGC 4 cut(s) 35, 318, 569, 572
ApoI RAATTY 1 cut(s) 84
AspLEI GCGC 2 cut(s) 323, 541
AspS9I GGNCC 2 cut(s) 377, 430
AsuC2I CCSGG 5 cut(s) 126, 229, 504, 708, 880
AsuHPI GGTGA 8 cut(s) 58, 148, 221, 358, 533, 539, 544, 860
AsuII TTCGAA 1 cut(s) 723
AvaII GGWCC 2 cut(s) 377, 430
BaeGI GKGCMC 2 cut(s) 126, 713
BarI GAAGNNNNNNTAC 2 cut(s) 849, 881
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 653
BbvI GCAGC 4 cut(s) 22, 330, 556, 559
BccI CCATC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 2 cut(s) 197, 341
BcnI CCSGG 5 cut(s) 126, 229, 504, 708, 880
BcoDI GTCTC 1 cut(s) 799
BfaI CTAG 1 cut(s) 915
BfmI CTRYAG 2 cut(s) 30, 48
BfoI RGCGCY 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 7 cut(s) 36, 178, 283, 319, 324, 570, 573
BlsI GCNGC 7 cut(s) 37, 179, 284, 320, 325, 571, 574
BmcAI AGTACT 2 cut(s) 28, 395
Bme1390I CCNGG 7 cut(s) 126, 197, 229, 341, 504, 708, 880
Bme18I GGWCC 2 cut(s) 377, 430
BmgT120I GGNCC 2 cut(s) 377, 430
BmiI GGNNCC 5 cut(s) 205, 226, 331, 378, 705
BmrFI CCNGG 7 cut(s) 126, 197, 229, 341, 504, 708, 880
BmsI GCATC 2 cut(s) 242, 735
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 2 cut(s) 362, 621
Bpu14I TTCGAA 1 cut(s) 723
BpuMI CCSGG 5 cut(s) 126, 229, 504, 708, 880
BsaJI CCNNGG 2 cut(s) 503, 879
BsaWI WCCGGW 5 cut(s) 57, 68, 206, 221, 332
Bsc4I CCNNNNNNNGG 7 cut(s) 132, 143, 228, 235, 285, 439, 509
Bse118I RCCGGY 5 cut(s) 158, 180, 200, 285, 326
BseAI TCCGGA 1 cut(s) 332
BseBI CCWGG 2 cut(s) 197, 341
BseDI CCNNGG 2 cut(s) 503, 879
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 7 cut(s) 132, 143, 228, 235, 285, 439, 509
BseRI GAGGAG 1 cut(s) 458
BseSI GKGCMC 2 cut(s) 126, 713
BseX3I CGGCCG 3 cut(s) 145, 178, 283
BseXI GCAGC 4 cut(s) 22, 330, 556, 559
BsgI GTGCAG 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 541
Bsh1285I CGRYCG 3 cut(s) 148, 181, 286
BshFI GGCC 9 cut(s) 78, 113, 136, 147, 180, 200, 285, 502, 773
BsiEI CGRYCG 3 cut(s) 148, 181, 286
BsiHKAI GWGCWC 1 cut(s) 653
BslFI GGGAC 2 cut(s) 253, 483
BslI CCNNNNNNNGG 7 cut(s) 132, 143, 228, 235, 285, 439, 509
BsmAI GTCTC 1 cut(s) 799
BsmFI GGGAC 2 cut(s) 253, 483
BsnI GGCC 9 cut(s) 78, 113, 136, 147, 180, 200, 285, 502, 773
Bsp119I TTCGAA 1 cut(s) 723
Bsp1286I GDGCHC 3 cut(s) 126, 653, 713
Bsp13I TCCGGA 1 cut(s) 332
Bsp143I GATC 2 cut(s) 411, 798
BspANI GGCC 9 cut(s) 78, 113, 136, 147, 180, 200, 285, 502, 773
BspEI TCCGGA 1 cut(s) 332
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 5 cut(s) 205, 226, 331, 378, 705
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 1 cut(s) 406
BspT104I TTCGAA 1 cut(s) 723
BsrFI RCCGGY 5 cut(s) 158, 180, 200, 285, 326
BssAI RCCGGY 5 cut(s) 158, 180, 200, 285, 326
BssECI CCNNGG 2 cut(s) 503, 879
BssMI GATC 2 cut(s) 411, 798
Bst2UI CCWGG 2 cut(s) 197, 341
Bst4CI ACNGT 4 cut(s) 31, 49, 856, 872
Bst6I CTCTTC 1 cut(s) 662
BstAPI GCANNNNNTGC 1 cut(s) 754
BstBI TTCGAA 1 cut(s) 723
BstC8I GCNNGC 1 cut(s) 750
BstF5I GGATG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 541
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 2 cut(s) 323, 541
BstKTI GATC 2 cut(s) 414, 801
BstMAI GTCTC 1 cut(s) 799
BstMBI GATC 2 cut(s) 411, 798
BstMCI CGRYCG 3 cut(s) 148, 181, 286
BstMWI GCNNNNNNNGC 2 cut(s) 569, 754
BstNI CCWGG 2 cut(s) 197, 341
BstSCI CCNGG 7 cut(s) 124, 195, 227, 339, 502, 706, 878
BstSFI CTRYAG 2 cut(s) 30, 48
BstSLI GKGCMC 2 cut(s) 126, 713
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 4 cut(s) 22, 330, 556, 559
BstV2I GAAGAC 1 cut(s) 162
BstZI CGGCCG 3 cut(s) 145, 178, 283
BsuRI GGCC 9 cut(s) 78, 113, 136, 147, 180, 200, 285, 502, 773
BtsCI GGATG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 852
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 750
CfoI GCGC 2 cut(s) 323, 541
Cfr10I RCCGGY 5 cut(s) 158, 180, 200, 285, 326
Cfr13I GGNCC 2 cut(s) 377, 430
CseI GACGC 1 cut(s) 156
Csp6I GTAC 2 cut(s) 27, 394
CspCI CAANNNNNGTGG 2 cut(s) 345, 380
CviAII CATG 1 cut(s) 841
CviQI GTAC 2 cut(s) 27, 394
DpnI GATC 2 cut(s) 413, 800
DpnII GATC 2 cut(s) 411, 798
DraI TTTAAA 1 cut(s) 639
DrdI GACNNNNNNGTC 2 cut(s) 62, 406
DseDI GACNNNNNNGTC 2 cut(s) 62, 406
EaeI YGGCCR 7 cut(s) 76, 111, 134, 145, 178, 198, 283
EagI CGGCCG 3 cut(s) 145, 178, 283
Eam1104I CTCTTC 1 cut(s) 662
EarI CTCTTC 1 cut(s) 662
EciI GGCGGA 1 cut(s) 404
EclXI CGGCCG 3 cut(s) 145, 178, 283
Eco47I GGWCC 2 cut(s) 377, 430
Eco52I CGGCCG 3 cut(s) 145, 178, 283
Eco57I CTGAAG 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 195, 339
FaeI CATG 1 cut(s) 844
FaiI YATR 3 cut(s) 419, 686, 842
FaqI GGGAC 2 cut(s) 253, 483
FatI CATG 1 cut(s) 840
FauI CCCGC 1 cut(s) 457
FblI GTMKAC 1 cut(s) 919
Fnu4HI GCNGC 7 cut(s) 36, 178, 283, 319, 324, 570, 573
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 7 cut(s) 36, 178, 283, 319, 324, 570, 573
FspBI CTAG 1 cut(s) 915
GlaI GCGC 2 cut(s) 322, 540
GluI GCNGC 7 cut(s) 36, 178, 283, 319, 324, 570, 573
GsuI CTGGAG 2 cut(s) 362, 621
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 9 cut(s) 78, 113, 136, 147, 180, 200, 285, 502, 773
HgaI GACGC 1 cut(s) 156
HhaI GCGC 2 cut(s) 323, 541
Hin1II CATG 1 cut(s) 844
Hin6I GCGC 2 cut(s) 321, 539
HinP1I GCGC 2 cut(s) 321, 539
HincII GTYRAC 2 cut(s) 788, 811
HindII GTYRAC 2 cut(s) 788, 811
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 5 cut(s) 232, 275, 298, 336, 845
HphI GGTGA 8 cut(s) 58, 148, 221, 358, 533, 539, 544, 860
Hpy166II GTNNAC 4 cut(s) 423, 788, 811, 920
Hpy188I TCNGA 6 cut(s) 8, 23, 662, 697, 832, 888
Hpy188III TCNNGA 2 cut(s) 333, 796
Hpy8I GTNNAC 4 cut(s) 423, 788, 811, 920
Hpy99I CGWCG 4 cut(s) 20, 23, 403, 876
HpyAV CCTTC 3 cut(s) 479, 739, 784
HpyCH4III ACNGT 4 cut(s) 31, 49, 856, 872
HpyCH4V TGCA 3 cut(s) 249, 575, 748
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 754
Hsp92II CATG 1 cut(s) 844
HspAI GCGC 2 cut(s) 321, 539
Kpn2I TCCGGA 1 cut(s) 332
Kzo9I GATC 2 cut(s) 411, 798
LmnI GCTCC 2 cut(s) 493, 656
Lsp1109I GCAGC 4 cut(s) 22, 330, 556, 559
LweI GCATC 2 cut(s) 242, 735
MaeI CTAG 1 cut(s) 915
MaeIII GTNAC 6 cut(s) 43, 64, 154, 532, 850, 856
MalI GATC 2 cut(s) 413, 800
MboI GATC 2 cut(s) 411, 798
MboII GAAGA 3 cut(s) 162, 649, 908
MhlI GDGCHC 3 cut(s) 126, 653, 713
MluCI AATT 2 cut(s) 84, 594
MlyI GAGTC 2 cut(s) 330, 854
MmeI TCCRAC 1 cut(s) 82
MroI TCCGGA 1 cut(s) 332
MseI TTAA 2 cut(s) 638, 925
MslI CAYNNNNRTG 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 563
MspR9I CCNGG 7 cut(s) 126, 197, 229, 341, 504, 708, 880
MvaI CCWGG 2 cut(s) 197, 341
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 2 cut(s) 569, 754
NciI CCSGG 5 cut(s) 126, 229, 504, 708, 880
NdeII GATC 2 cut(s) 411, 798
NlaIII CATG 1 cut(s) 844
NlaIV GGNNCC 5 cut(s) 205, 226, 331, 378, 705
NmuCI GTSAC 4 cut(s) 64, 154, 532, 850
NspV TTCGAA 1 cut(s) 723
OliI CACNNNNGTG 1 cut(s) 873
PcsI WCGNNNNNNNCGW 3 cut(s) 12, 407, 729
PfeI GAWTC 3 cut(s) 232, 275, 298
PfoI TCCNGGA 2 cut(s) 227, 339
PkrI GCNGC 7 cut(s) 37, 179, 284, 320, 325, 571, 574
PleI GAGTC 2 cut(s) 330, 853
PpsI GAGTC 2 cut(s) 330, 853
Psp6I CCWGG 2 cut(s) 195, 339
PspGI CCWGG 2 cut(s) 195, 339
PspN4I GGNNCC 5 cut(s) 205, 226, 331, 378, 705
PspPI GGNCC 2 cut(s) 377, 430
RsaI GTAC 2 cut(s) 28, 395
RsaNI GTAC 2 cut(s) 27, 394
RseI CAYNNNNRTG 1 cut(s) 873
SaqAI TTAA 2 cut(s) 638, 925
SatI GCNGC 7 cut(s) 36, 178, 283, 319, 324, 570, 573
Sau3AI GATC 2 cut(s) 411, 798
Sau96I GGNCC 2 cut(s) 377, 430
ScaI AGTACT 2 cut(s) 28, 395
SchI GAGTC 2 cut(s) 330, 854
ScrFI CCNGG 7 cut(s) 126, 197, 229, 341, 504, 708, 880
SduI GDGCHC 3 cut(s) 126, 653, 713
SfaNI GCATC 2 cut(s) 242, 735
SfcI CTRYAG 2 cut(s) 30, 48
SfuI TTCGAA 1 cut(s) 723
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 2 cut(s) 377, 430
SmiMI CAYNNNNRTG 1 cut(s) 873
Sse9I AATT 2 cut(s) 84, 594
SspMI CTAG 1 cut(s) 915
StyD4I CCNGG 7 cut(s) 124, 195, 227, 339, 502, 706, 878
TaaI ACNGT 4 cut(s) 31, 49, 856, 872
TaqI TCGA 6 cut(s) 398, 410, 645, 723, 743, 797
TaqII GACCGA 1 cut(s) 773
TasI AATT 2 cut(s) 84, 594
TatI WGTACW 2 cut(s) 26, 393
TauI GCSGC 3 cut(s) 180, 285, 326
TfiI GAWTC 3 cut(s) 232, 275, 298
Tru1I TTAA 2 cut(s) 638, 925
Tru9I TTAA 2 cut(s) 638, 925
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 4 cut(s) 64, 154, 532, 850
TseI GCWGC 4 cut(s) 35, 318, 569, 572
Tsp45I GTSAC 4 cut(s) 64, 154, 532, 850
TspDTI ATGAA 1 cut(s) 829
TspGWI ACGGA 5 cut(s) 369, 404, 440, 705, 838
TspRI CASTG 1 cut(s) 859
VpaK11BI GGWCC 2 cut(s) 377, 430
XapI RAATTY 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 919
XspI CTAG 1 cut(s) 915
ZrmI AGTACT 2 cut(s) 28, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.