Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003385.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18568 .. 23612

Gene Structure 5045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atggtatctcgtccacctcatccattcatccaatacaacgaggaaattttcagttcgattgtagaagataaagccagcctagaagctccacggttggctgaattaaagattgagcccaaaattggtcattcaagtgcgttagaagaagtggacaatcatgtggttaagtatagagaccaattggttgaagaaattgaacattttgacattattgttggagacaaacctgatctagacaaatcacaaccaacaaaatttgaggtaaaggctgaaatttgtgattcaggtacatgttcgaaggttgaaatatcggcctacatagtggccgaaaatcaagaacatactagaatcttgatgtcaagaaaccacttctcgtcatggagagatgggttcacacgaacttctcagtgttcggccgttggtaactactatgaagagcaagctgttagggctggattcgtagtagatttattgctacaaatcgagcaatcaaaaggtagaggagatccagcctggcacgagcggctaaaccctgaccgtcaaggtcgtcaccaccaatccggtcgagaggtcacctccaagaatggcggtgctcgatcctctctctcctccctccctcttcagccccctcgcatcactgagtgcctcgttagcgatgagactggaaccattgtcttcactgctcgcaatgaccaagttgacattatgaagcctagtaccactgtgattccacgcaatacaaagattgacatgttcatcaaaggcactatgaggcttgcagttgataaatggggtcgtgttgaagtcacagaaccagccagctttgaagttaaggaggtcaacaatctttctgttgtcgagtatgaattacttagtgttgctgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

33.27

Weight (kDa)

5.32

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_Ssb-like	PF21473	191 - 269	1.8e-29	Single-stranded DNA binding protein Ssb-like, OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	523
AciI	CCGC	2 cut(s)	523, 588
AclWI	GGATC	2 cut(s)	500, 591
AcoI	YGGCCR	2 cut(s)	324, 414
AcsI	RAATTY	3 cut(s)	45, 254, 273
AcuI	CTGAAG	1 cut(s)	605
AdeI	CACNNNGTG	1 cut(s)	642
AfaI	GTAC	2 cut(s)	289, 718
AfiI	CCNNNNNNNGG	1 cut(s)	122
AflIII	ACRYGT	2 cut(s)	290, 750
AgsI	TTSAA	6 cut(s)	132, 188, 197, 305, 803, 827
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	3 cut(s)	86, 443, 822
AluI	AGCT	3 cut(s)	86, 443, 822
Alw21I	GWGCWC	1 cut(s)	595
Alw26I	GTCTC	3 cut(s)	168, 213, 653
AlwI	GGATC	2 cut(s)	500, 591
AoxI	GGCC	3 cut(s)	312, 324, 414
ApoI	RAATTY	3 cut(s)	45, 254, 273
AsuHPI	GGTGA	2 cut(s)	542, 565
AsuII	TTCGAA	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	667
Bbv12I	GWGCWC	1 cut(s)	595
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	168, 213, 653
BfaI	CTAG	4 cut(s)	80, 233, 345, 714
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	1 cut(s)	514
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	1 cut(s)	514
BmsI	GCATC	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	667
BplI	GAGNNNNNCTC	2 cut(s)	560, 592
Bpu14I	TTCGAA	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	667
Bse3DI	GCAATG	1 cut(s)	694
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	19, 27
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	2 cut(s)	419, 630
BseNI	ACTGG	1 cut(s)	667
BseRI	GAGGAG	2 cut(s)	516, 598
BseX3I	CGGCCG	1 cut(s)	414
Bsh1285I	CGRYCG	2 cut(s)	417, 565
BshFI	GGCC	3 cut(s)	314, 326, 416
BsiEI	CGRYCG	2 cut(s)	417, 565
BsiHKAI	GWGCWC	1 cut(s)	595
BsiSI	CCGG	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	3 cut(s)	168, 213, 653
BsnI	GGCC	3 cut(s)	314, 326, 416
Bso31I	GGTCTC	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	117, 595
Bsp143I	GATC	3 cut(s)	229, 505, 596
BspACI	CCGC	2 cut(s)	523, 588
BspANI	GGCC	3 cut(s)	314, 326, 416
BspCNI	CTCAG	2 cut(s)	418, 631
BspLI	GGNNCC	1 cut(s)	667
BspPI	GGATC	2 cut(s)	500, 591
BspQI	GCTCTTC	1 cut(s)	429
BspT104I	TTCGAA	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	694
BsrI	ACTGG	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	3 cut(s)	229, 505, 596
BssSI	CACGAG	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	3 cut(s)	93, 539, 724
Bst6I	CTCTTC	2 cut(s)	429, 624
BstBI	TTCGAA	1 cut(s)	296
BstC8I	GCNNGC	5 cut(s)	76, 441, 685, 777, 820
BstDEI	CTNAG	3 cut(s)	405, 639, 872
BstDSI	CCRYGG	1 cut(s)	89
BstEII	GGTNACC	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	19, 27
BstKTI	GATC	3 cut(s)	232, 508, 599
BstMAI	GTCTC	3 cut(s)	168, 213, 653
BstMBI	GATC	3 cut(s)	229, 505, 596
BstMCI	CGRYCG	2 cut(s)	417, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 523, 651
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	2 cut(s)	294, 754
BstPI	GGTNACC	1 cut(s)	571
BstSCI	CCNGG	1 cut(s)	512
BstV2I	GAAGAC	1 cut(s)	667
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BstZI	CGGCCG	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	314, 326, 416
BtgI	CCRYGG	1 cut(s)	89
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	19, 27
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	4 cut(s)	413, 636, 678, 720
Cac8I	GCNNGC	5 cut(s)	76, 441, 685, 777, 820
Csp6I	GTAC	2 cut(s)	288, 717
CviAII	CATG	4 cut(s)	158, 291, 378, 751
CviQI	GTAC	2 cut(s)	288, 717
DdeI	CTNAG	3 cut(s)	405, 639, 872
DpnI	GATC	3 cut(s)	231, 507, 598
DpnII	GATC	3 cut(s)	229, 505, 596
DraIII	CACNNNGTG	1 cut(s)	642
EaeI	YGGCCR	2 cut(s)	324, 414
EagI	CGGCCG	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	429, 624
EarI	CTCTTC	2 cut(s)	429, 624
EclXI	CGGCCG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	168
Eco52I	CGGCCG	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	605
Eco91I	GGTNACC	1 cut(s)	571
EcoO65I	GGTNACC	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	4 cut(s)	161, 294, 381, 754
FatI	CATG	4 cut(s)	157, 290, 377, 750
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	2 cut(s)	6, 14
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	4 cut(s)	80, 233, 345, 714
GluI	GCNGC	1 cut(s)	524
HaeIII	GGCC	3 cut(s)	314, 326, 416
HapII	CCGG	1 cut(s)	561
Hin1II	CATG	4 cut(s)	161, 294, 381, 754
HincII	GTYRAC	2 cut(s)	700, 841
HindII	GTYRAC	2 cut(s)	700, 841
HinfI	GANTC	4 cut(s)	281, 348, 456, 727
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	2 cut(s)	542, 565
Hpy166II	GTNNAC	5 cut(s)	14, 151, 393, 700, 841
Hpy188III	TCNNGA	5 cut(s)	233, 335, 352, 360, 566
Hpy8I	GTNNAC	5 cut(s)	14, 151, 393, 700, 841
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	3 cut(s)	93, 539, 724
HpyCH4V	TGCA	1 cut(s)	779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 523, 651
HpyF3I	CTNAG	3 cut(s)	405, 639, 872
Hsp92II	CATG	4 cut(s)	161, 294, 381, 754
Kzo9I	GATC	3 cut(s)	229, 505, 596
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	91
LweI	GCATC	1 cut(s)	642
MaeI	CTAG	4 cut(s)	80, 233, 345, 714
MaeIII	GTNAC	4 cut(s)	422, 548, 571, 805
MalI	GATC	3 cut(s)	231, 507, 598
MbiI	CCGCTC	1 cut(s)	523
MboI	GATC	3 cut(s)	229, 505, 596
MboII	GAAGA	6 cut(s)	77, 155, 200, 446, 611, 667
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	2 cut(s)	117, 595
MluCI	AATT	8 cut(s)	45, 101, 120, 179, 192, 254, 273, 866
MmeI	TCCRAC	1 cut(s)	196
MseI	TTAA	3 cut(s)	104, 165, 831
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	1 cut(s)	514
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	449, 523, 651
NdeII	GATC	3 cut(s)	229, 505, 596
NlaIII	CATG	4 cut(s)	161, 294, 381, 754
NlaIV	GGNNCC	1 cut(s)	667
NmuCI	GTSAC	3 cut(s)	548, 571, 805
NspI	RCATGY	2 cut(s)	294, 754
NspV	TTCGAA	1 cut(s)	296
PciI	ACATGT	2 cut(s)	290, 750
PciSI	GCTCTTC	1 cut(s)	429
PfeI	GAWTC	4 cut(s)	281, 348, 456, 727
PkrI	GCNGC	1 cut(s)	525
PscI	ACATGT	2 cut(s)	290, 750
Psp6I	CCWGG	1 cut(s)	512
PspEI	GGTNACC	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	2 cut(s)	289, 718
RsaNI	GTAC	2 cut(s)	288, 717
RseI	CAYNNNNRTG	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	104, 165, 831
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	3 cut(s)	229, 505, 596
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	2 cut(s)	117, 595
SfaNI	GCATC	1 cut(s)	642
SfuI	TTCGAA	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	8 cut(s)	45, 101, 120, 179, 192, 254, 273, 866
SsiI	CCGC	2 cut(s)	523, 588
SspMI	CTAG	4 cut(s)	80, 233, 345, 714
StyD4I	CCNGG	1 cut(s)	512
TaaI	ACNGT	3 cut(s)	93, 539, 724
TaqI	TCGA	6 cut(s)	56, 296, 483, 565, 595, 858
TasI	AATT	8 cut(s)	45, 101, 120, 179, 192, 254, 273, 866
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	4 cut(s)	281, 348, 456, 727
Tru1I	TTAA	3 cut(s)	104, 165, 831
Tru9I	TTAA	3 cut(s)	104, 165, 831
TscAI	CASTG	4 cut(s)	413, 643, 685, 727
TseFI	GTSAC	3 cut(s)	548, 571, 805
Tsp45I	GTSAC	3 cut(s)	548, 571, 805
TspDTI	ATGAA	5 cut(s)	16, 447, 722, 745, 879
TspRI	CASTG	4 cut(s)	413, 643, 685, 727
XapI	RAATTY	3 cut(s)	45, 254, 273
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	2 cut(s)	294, 754
XspI	CTAG	4 cut(s)	80, 233, 345, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.