Rmu_sc0003392.1_g000016

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003392.1
N/A
Physical Location & Seq
Forward (+)
64858 .. 65929
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
atgcttattgttgccagtacttctattgaagacctcaatgttatcagtttcataataaatatgcatagatctgattctcaaatacttctgtttgcatgtcacagcattcttgttgatggttgtgaaccattttcagaagacttatggacagatgtcaggataaacaggttcacatttcaatgctgcatgctgtgctaccgctgcaagatacctacggtgaatcaagagactggcattcaaggaactgagccaaatgaaactctcaagaaatttcgatcggatgcaactgtgtatccatctcggaaacagcagggaagggtctacttcgggcagtatcttgtttgcaaagactctctgattgctggcgtgaagggaaatgtcataaaggttggagatcttcttcatgtcctcaacatggtttcctctgctgatgaagttccggaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

148

Amino Acids

16.67

Weight (kDa)

5.59

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC PF03473 36 - 132 3.5e-10 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 3 cut(s) 29, 179, 239
Alw26I GTCTC 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 439
ApeKI GCWGC 2 cut(s) 183, 201
ApoI RAATTY 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 229
BbsI GAAGAC 2 cut(s) 36, 144
BbvI GCAGC 2 cut(s) 170, 188
BccI CCATC 2 cut(s) 110, 304
BciVI GTATCC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 221
BfuI GTATCC 1 cut(s) 303
BglII AGATCT 2 cut(s) 68, 394
BisI GCNGC 2 cut(s) 184, 202
BlsI GCNGC 2 cut(s) 185, 203
BmcAI AGTACT 1 cut(s) 19
BmsI GCATC 1 cut(s) 271
BoxI GACNNNNGTC 1 cut(s) 152
BpiI GAAGAC 2 cut(s) 36, 144
BpuEI CTTGAG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 439
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse1I ACTGG 2 cut(s) 15, 235
BseAI TCCGGA 1 cut(s) 439
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 15, 235
BseXI GCAGC 2 cut(s) 170, 188
Bsh1285I CGRYCG 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 1 cut(s) 221
BsmI GAATGC 2 cut(s) 105, 234
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 3 cut(s) 68, 275, 394
BspACI CCGC 1 cut(s) 199
BspCNI CTCAG 1 cut(s) 238
BspEI TCCGGA 1 cut(s) 439
BsrI ACTGG 2 cut(s) 15, 235
BssMI GATC 3 cut(s) 68, 275, 394
Bst4CI ACNGT 2 cut(s) 217, 289
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 188, 364
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 3 cut(s) 71, 278, 397
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 68, 275, 394
BstMCI CGRYCG 1 cut(s) 278
BstMWI GCNNNNNNNGC 2 cut(s) 192, 201
BstNSI RCATGY 2 cut(s) 99, 190
BstPAI GACNNNNGTC 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 170, 188
BstV2I GAAGAC 2 cut(s) 36, 144
BstX2I RGATCY 2 cut(s) 68, 394
BstYI RGATCY 2 cut(s) 68, 394
BsuI GTATCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 188, 364
Csp6I GTAC 1 cut(s) 18
CviAII CATG 4 cut(s) 96, 187, 404, 415
CviJI RGCY 1 cut(s) 250
CviKI_1 RGCY 1 cut(s) 250
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 70, 277, 396
DpnII GATC 3 cut(s) 68, 275, 394
EcoT22I ATGCAT 1 cut(s) 66
FaeI CATG 4 cut(s) 99, 190, 407, 418
FaiI YATR 9 cut(s) 53, 62, 66, 97, 145, 188, 383, 405, 416
FatI CATG 4 cut(s) 95, 186, 403, 414
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 184, 202
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 184, 202
GluI GCNGC 2 cut(s) 184, 202
HapII CCGG 1 cut(s) 440
Hin1II CATG 4 cut(s) 99, 190, 407, 418
HinfI GANTC 3 cut(s) 74, 220, 350
HpaII CCGG 1 cut(s) 440
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 3 cut(s) 125, 171, 322
Hpy188I TCNGA 5 cut(s) 73, 136, 280, 303, 357
Hpy188III TCNNGA 4 cut(s) 157, 224, 265, 440
Hpy8I GTNNAC 3 cut(s) 125, 171, 322
HpyAV CCTTC 2 cut(s) 309, 364
HpyCH4III ACNGT 2 cut(s) 217, 289
HpyCH4V TGCA 6 cut(s) 64, 95, 186, 204, 284, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 201
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 4 cut(s) 99, 190, 407, 418
Kpn2I TCCGGA 1 cut(s) 439
Kzo9I GATC 3 cut(s) 68, 275, 394
LpnPI CCDG 6 cut(s) 28, 142, 151, 216, 296, 348
Lsp1109I GCAGC 2 cut(s) 170, 188
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 98
MalI GATC 3 cut(s) 70, 277, 396
MboI GATC 3 cut(s) 68, 275, 394
MboII GAAGA 4 cut(s) 41, 149, 389, 392
MflI RGATCY 2 cut(s) 68, 394
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 3 cut(s) 44, 419, 433
Mph1103I ATGCAT 1 cut(s) 66
MroI TCCGGA 1 cut(s) 439
MslI CAYNNNNRTG 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 1 cut(s) 440
Mva1269I GAATGC 2 cut(s) 105, 234
MwoI GCNNNNNNNGC 2 cut(s) 192, 201
NdeII GATC 3 cut(s) 68, 275, 394
NlaIII CATG 4 cut(s) 99, 190, 407, 418
NmuCI GTSAC 1 cut(s) 98
NsiI ATGCAT 1 cut(s) 66
NspI RCATGY 2 cut(s) 99, 190
PaeI GCATGC 1 cut(s) 190
PctI GAATGC 2 cut(s) 105, 234
PfeI GAWTC 2 cut(s) 74, 220
PkrI GCNGC 2 cut(s) 185, 203
Ple19I CGATCG 1 cut(s) 278
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
PshAI GACNNNNGTC 1 cut(s) 152
PsuI RGATCY 2 cut(s) 68, 394
PvuI CGATCG 1 cut(s) 278
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 178
SatI GCNGC 2 cut(s) 184, 202
Sau3AI GATC 3 cut(s) 68, 275, 394
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 1 cut(s) 344
SetI ASST 4 cut(s) 36, 170, 214, 390
SfaNI GCATC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SphI GCATGC 1 cut(s) 190
Sse9I AATT 1 cut(s) 269
SsiI CCGC 1 cut(s) 199
TaaI ACNGT 2 cut(s) 217, 289
TaqI TCGA 1 cut(s) 274
TasI AATT 1 cut(s) 269
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 2 cut(s) 74, 220
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 2 cut(s) 183, 201
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 4 cut(s) 40, 270, 392, 447
XapI RAATTY 1 cut(s) 269
XceI RCATGY 2 cut(s) 99, 190
XmiI GTMKAC 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 19
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.