Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003393.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

32607 .. 40371

Gene Structure 7765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

atgaatgcaggaggccggtgggctaaatgtatgtgtgtacatactagggaagtcttcactaggtttggcactatcggctccaagcccattgggatccccaggtaccatgctatggactgggtccatgacccaccatggcggggcccatgtgggttgtcaccccaggcacccagggcccgggacctgaccaacacagtccatctaaatatacaccagaaggctgatatagcagcaaggggacaacattcatcccacatcgaagatagggggaacccctttcccttgctcgagattgaggtgttggatcggtaccccaggtggtatagcattctatgtgaggtacccggagaaagccaccagaaacaatgtgtgaggccggtggccgaaatgcatgtagttgttttaccggcattgactagacagagatcatatggatatgttccccagccacctgccatcttatactactctcagagatcatccaaagggggtcttctcataactgaagccactggagtttctgagacagcacaagggtatccagatacccctggtatatggtcaaaggagcaagttgaagcatggaaacccattgtcaatgctgtacatgctaaagggggtgtcttcttctgtcagatttggcatgtggggagggtttcaaatagtggctttcaaccaaatgggcaagctccaatctcttctactgacaagtacctaacaccccaaataggatctaatggtattgatgttatgcaattcacacctccaagacgattgaggacagatgaaattcctcaaattgtcaatgatttcagacttgctgcaaggaatgctatggaagctggctttgatggagttgaaattcatggctccagtggcttccttatcgatcagtttttaaaagatcaagtaaatgatcgaactgaccaatatggtggatctctagaaaagcgttgccgatttgcactagacattgttgaagctgttgtcaacgagataggagcagataaagttggaattaaattatctccatttgccaactatatggaatccggagattctaatccaaaggaattgggcctttatctagtcaattccttgaacaaatatggaattctgtactgccaaatgattgagccaagaatgaagacacttggcgacaaaattgactgtccccagagtcttgtacccatgagaaaggcttttaatggtaccttcattgctgttggtggttttgacagggaagatgggaacaatgctgtggctgaagacagtgcagatcttgttgcttttggtcgttggttcttggctaatccagatttgccaaagagatttgagcttaatgctcctctaaataagtacatcagagatacattctacatatctgatccggttcttggttacactgattatccatttcttgacagcactacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

478

Amino Acids

53.34

Weight (kDa)

6.47

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	133 - 451	1e-75	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
Acc65I	GGTACC	4 cut(s)	102, 309, 340, 1211
AccB1I	GGYRCC	5 cut(s)	102, 166, 309, 340, 1211
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccIII	TCCGGA	1 cut(s)	1052
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	6 cut(s)	88, 101, 312, 739, 946, 1382
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	3 cut(s)	789, 861, 1113
AcuI	CTGAAG	2 cut(s)	525, 1287
AfiI	CCNNNNNNNGG	5 cut(s)	112, 140, 177, 728, 1397
AgsI	TTSAA	6 cut(s)	578, 660, 674, 860, 980, 1102
AjnI	CCWGG	5 cut(s)	98, 162, 170, 314, 550
AluBI	AGCT	4 cut(s)	689, 842, 983, 1339
AluI	AGCT	4 cut(s)	689, 842, 983, 1339
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	6 cut(s)	88, 101, 312, 739, 946, 1382
Ama87I	CYCGRG	2 cut(s)	177, 287
Aor13HI	TCCGGA	1 cut(s)	1052
AoxI	GGCC	6 cut(s)	13, 142, 174, 374, 381, 1078
ApaI	GGGCCC	2 cut(s)	146, 178
ApeKI	GCWGC	2 cut(s)	230, 821
ApoI	RAATTY	3 cut(s)	789, 861, 1113
Asp718I	GGTACC	4 cut(s)	102, 309, 340, 1211
AspS9I	GGNCC	7 cut(s)	121, 142, 143, 174, 175, 181, 1078
AsuC2I	CCSGG	3 cut(s)	178, 179, 345
AsuHPI	GGTGA	1 cut(s)	150
AvaI	CYCGRG	2 cut(s)	177, 287
AvaII	GGWCC	2 cut(s)	121, 181
BaeGI	GKGCMC	2 cut(s)	146, 178
BaeI	ACNNNNGTAYC	2 cut(s)	521, 554
BamHI	GGATCC	1 cut(s)	93
BanI	GGYRCC	5 cut(s)	102, 166, 309, 340, 1211
BanII	GRGCYC	2 cut(s)	146, 178
BbsI	GAAGAC	5 cut(s)	46, 485, 616, 1154, 1275
BbvI	GCAGC	2 cut(s)	242, 808
BccI	CCATC	4 cut(s)	207, 464, 845, 1241
BciT130I	CCWGG	5 cut(s)	100, 164, 172, 316, 552
BciVI	GTATCC	1 cut(s)	549
BcnI	CCSGG	3 cut(s)	178, 179, 345
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	6 cut(s)	45, 60, 417, 944, 968, 1088
BfuAI	ACCTGC	1 cut(s)	460
BfuI	GTATCC	1 cut(s)	549
BglII	AGATCT	1 cut(s)	1279
BisI	GCNGC	2 cut(s)	231, 822
BlsI	GCNGC	2 cut(s)	232, 823
Bme1390I	CCNGG	8 cut(s)	100, 164, 172, 178, 179, 316, 345, 552
Bme18I	GGWCC	2 cut(s)	121, 181
BmeT110I	CYCGRG	2 cut(s)	177, 287
BmgT120I	GGNCC	7 cut(s)	121, 142, 143, 174, 175, 181, 1078
BmrFI	CCNGG	8 cut(s)	100, 164, 172, 178, 179, 316, 345, 552
BmrI	ACTGGG	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	5 cut(s)	46, 485, 616, 1154, 1275
BpmI	CTGGAG	2 cut(s)	534, 856
BpuMI	CCSGG	3 cut(s)	178, 179, 345
Bsa29I	ATCGAT	1 cut(s)	888
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaJI	CCNNGG	8 cut(s)	98, 134, 162, 170, 171, 177, 314, 550
BsaWI	WCCGGW	2 cut(s)	1052, 1390
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 140, 177, 728, 1397
Bse118I	RCCGGY	3 cut(s)	15, 376, 406
Bse1I	ACTGG	3 cut(s)	122, 517, 873
Bse3DI	GCAATG	1 cut(s)	1218
Bse8I	GATNNNNATC	1 cut(s)	1062
BseAI	TCCGGA	1 cut(s)	1052
BseBI	CCWGG	5 cut(s)	100, 164, 172, 316, 552
BseCI	ATCGAT	1 cut(s)	888
BseDI	CCNNGG	8 cut(s)	98, 134, 162, 170, 171, 177, 314, 550
BseGI	GGATG	2 cut(s)	248, 479
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	5 cut(s)	112, 140, 177, 728, 1397
BseMI	GCAATG	1 cut(s)	1218
BseMII	CTCAG	2 cut(s)	485, 513
BseNI	ACTGG	3 cut(s)	122, 517, 873
BseRI	GAGGAG	1 cut(s)	1338
BseSI	GKGCMC	2 cut(s)	146, 178
BseXI	GCAGC	2 cut(s)	242, 808
BseYI	CCCAGC	1 cut(s)	444
BsgI	GTGCAG	1 cut(s)	1296
BshFI	GGCC	6 cut(s)	15, 144, 176, 376, 383, 1080
BshNI	GGYRCC	5 cut(s)	102, 166, 309, 340, 1211
BshVI	ATCGAT	1 cut(s)	888
BsiHKCI	CYCGRG	2 cut(s)	177, 287
BsiSI	CCGG	7 cut(s)	16, 178, 345, 377, 407, 1053, 1391
BslFI	GGGAC	3 cut(s)	194, 252, 1158
BslI	CCNNNNNNNGG	5 cut(s)	112, 140, 177, 728, 1397
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	3 cut(s)	194, 252, 1158
BsmI	GAATGC	3 cut(s)	10, 327, 835
BsnI	GGCC	6 cut(s)	15, 144, 176, 376, 383, 1080
BsoBI	CYCGRG	2 cut(s)	177, 287
Bsp120I	GGGCCC	2 cut(s)	142, 174
Bsp1286I	GDGCHC	2 cut(s)	146, 178
Bsp13I	TCCGGA	1 cut(s)	1052
Bsp1407I	TGTACA	2 cut(s)	37, 604
Bsp19I	CCATGG	1 cut(s)	134
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	6 cut(s)	15, 144, 176, 376, 383, 1080
BspCNI	CTCAG	2 cut(s)	484, 514
BspDI	ATCGAT	1 cut(s)	888
BspEI	TCCGGA	1 cut(s)	1052
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	6 cut(s)	88, 101, 312, 739, 946, 1382
BspT107I	GGYRCC	5 cut(s)	102, 166, 309, 340, 1211
BsrDI	GCAATG	1 cut(s)	1218
BsrFI	RCCGGY	3 cut(s)	15, 376, 406
BsrGI	TGTACA	2 cut(s)	37, 604
BsrI	ACTGG	3 cut(s)	122, 517, 873
BssAI	RCCGGY	3 cut(s)	15, 376, 406
BssECI	CCNNGG	8 cut(s)	98, 134, 162, 170, 171, 177, 314, 550
BssT1I	CCWWGG	1 cut(s)	134
Bst2UI	CCWGG	5 cut(s)	100, 164, 172, 316, 552
Bst4CI	ACNGT	3 cut(s)	196, 1172, 1274
Bst6I	CTCTTC	1 cut(s)	703
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstAUI	TGTACA	2 cut(s)	37, 604
BstC8I	GCNNGC	2 cut(s)	687, 844
BstDEI	CTNAG	2 cut(s)	471, 522
BstDSI	CCRYGG	1 cut(s)	134
BstF5I	GGATG	2 cut(s)	248, 479
BstMAI	GTCTC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	7 cut(s)	75, 173, 227, 608, 830, 839, 876
BstNI	CCWGG	5 cut(s)	100, 164, 172, 316, 552
BstNSI	RCATGY	3 cut(s)	395, 611, 647
BstSCI	CCNGG	8 cut(s)	98, 162, 170, 176, 177, 314, 343, 550
BstSLI	GKGCMC	2 cut(s)	146, 178
BstV1I	GCAGC	2 cut(s)	242, 808
BstV2I	GAAGAC	5 cut(s)	46, 485, 616, 1154, 1275
BstX2I	RGATCY	4 cut(s)	93, 731, 938, 1279
BstXI	CCANNNNNNTGG	2 cut(s)	935, 1045
BstYI	RGATCY	4 cut(s)	93, 731, 938, 1279
Bsu15I	ATCGAT	1 cut(s)	888
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	6 cut(s)	15, 144, 176, 376, 383, 1080
BsuTUI	ATCGAT	1 cut(s)	888
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	248, 479
BtsIMutI	CAGTG	4 cut(s)	510, 880, 1279, 1404
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	687, 844
Cfr10I	RCCGGY	3 cut(s)	15, 376, 406
Cfr13I	GGNCC	7 cut(s)	121, 142, 143, 174, 175, 181, 1078
Cfr9I	CCCGGG	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	888
DdeI	CTNAG	2 cut(s)	471, 522
DraI	TTTAAA	1 cut(s)	900
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	703
EarI	CTCTTC	1 cut(s)	703
Eco130I	CCWWGG	1 cut(s)	134
Eco24I	GRGCYC	2 cut(s)	146, 178
Eco47I	GGWCC	2 cut(s)	121, 181
Eco57I	CTGAAG	2 cut(s)	525, 1287
Eco88I	CYCGRG	2 cut(s)	177, 287
EcoO109I	RGGNCCY	3 cut(s)	142, 174, 181
EcoRI	GAATTC	1 cut(s)	1113
EcoRII	CCWGG	5 cut(s)	98, 162, 170, 314, 550
EcoT14I	CCWWGG	1 cut(s)	134
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	2 cut(s)	146, 178
ErhI	CCWWGG	1 cut(s)	134
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	3 cut(s)	194, 252, 1158
FauI	CCCGC	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	2 cut(s)	231, 822
FokI	GGATG	2 cut(s)	235, 466
FriOI	GRGCYC	2 cut(s)	146, 178
Fsp4HI	GCNGC	2 cut(s)	231, 822
FspBI	CTAG	6 cut(s)	45, 60, 417, 944, 968, 1088
GluI	GCNGC	2 cut(s)	231, 822
GsaI	CCCAGC	1 cut(s)	448
GsuI	CTGGAG	2 cut(s)	534, 856
HaeIII	GGCC	6 cut(s)	15, 144, 176, 376, 383, 1080
HapII	CCGG	7 cut(s)	16, 178, 345, 377, 407, 1053, 1391
HincII	GTYRAC	1 cut(s)	991
HindII	GTYRAC	1 cut(s)	991
HinfI	GANTC	3 cut(s)	1049, 1058, 1180
HpaII	CCGG	7 cut(s)	16, 178, 345, 377, 407, 1053, 1391
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	2 cut(s)	38, 991
Hpy188I	TCNGA	6 cut(s)	474, 523, 636, 815, 1367, 1387
Hpy188III	TCNNGA	6 cut(s)	289, 542, 944, 1053, 1316, 1421
Hpy8I	GTNNAC	2 cut(s)	38, 991
HpyAV	CCTTC	2 cut(s)	211, 1225
HpyCH4III	ACNGT	3 cut(s)	196, 1172, 1274
HpyCH4V	TGCA	6 cut(s)	8, 391, 754, 824, 965, 1277
HpyF10VI	GCNNNNNNNGC	7 cut(s)	75, 173, 227, 608, 830, 839, 876
HpyF3I	CTNAG	2 cut(s)	471, 522
Kpn2I	TCCGGA	1 cut(s)	1052
KpnI	GGTACC	4 cut(s)	106, 313, 344, 1215
LmnI	GCTCC	6 cut(s)	83, 568, 694, 875, 1001, 1351
Lsp1109I	GCAGC	2 cut(s)	242, 808
MaeI	CTAG	6 cut(s)	45, 60, 417, 944, 968, 1088
MaeIII	GTNAC	2 cut(s)	156, 1400
MboII	GAAGA	9 cut(s)	46, 272, 485, 616, 619, 690, 1159, 1256, 1280
MflI	RGATCY	4 cut(s)	93, 731, 938, 1279
MhlI	GDGCHC	2 cut(s)	146, 178
MlyI	GAGTC	1 cut(s)	1189
MmeI	TCCRAC	2 cut(s)	282, 994
MnlI	CCTC	9 cut(s)	5, 289, 331, 366, 645, 771, 774, 804, 1359
Mph1103I	ATGCAT	1 cut(s)	393
MroI	TCCGGA	1 cut(s)	1052
MseI	TTAA	4 cut(s)	899, 1020, 1206, 1341
MspI	CCGG	7 cut(s)	16, 178, 345, 377, 407, 1053, 1391
MspR9I	CCNGG	8 cut(s)	100, 164, 172, 178, 179, 316, 345, 552
Mva1269I	GAATGC	3 cut(s)	10, 327, 835
MvaI	CCWGG	5 cut(s)	100, 164, 172, 316, 552
MwoI	GCNNNNNNNGC	7 cut(s)	75, 173, 227, 608, 830, 839, 876
NciI	CCSGG	3 cut(s)	178, 179, 345
NcoI	CCATGG	1 cut(s)	134
NdeI	CATATG	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	156
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	3 cut(s)	395, 611, 647
PaeR7I	CTCGAG	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	460
PasI	CCCWGGG	1 cut(s)	171
PctI	GAATGC	3 cut(s)	10, 327, 835
PfeI	GAWTC	2 cut(s)	1049, 1058
PflFI	GACNNNGTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	232, 823
PleI	GAGTC	1 cut(s)	1188
PpsI	GAGTC	1 cut(s)	1188
PpuMI	RGGWCCY	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	5 cut(s)	98, 162, 170, 314, 550
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	5 cut(s)	98, 162, 170, 314, 550
PspOMI	GGGCCC	2 cut(s)	142, 174
PspPI	GGNCC	7 cut(s)	121, 142, 143, 174, 175, 181, 1078
PspPPI	RGGWCCY	1 cut(s)	181
PsuI	RGATCY	4 cut(s)	93, 731, 938, 1279
PsyI	GACNNNGTC	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	899, 1020, 1206, 1341
SatI	GCNGC	2 cut(s)	231, 822
Sau96I	GGNCC	7 cut(s)	121, 142, 143, 174, 175, 181, 1078
SchI	GAGTC	1 cut(s)	1189
ScrFI	CCNGG	8 cut(s)	100, 164, 172, 178, 179, 316, 345, 552
SduI	GDGCHC	2 cut(s)	146, 178
Sfr274I	CTCGAG	1 cut(s)	287
SinI	GGWCC	2 cut(s)	121, 181
SlaI	CTCGAG	1 cut(s)	287
SmaI	CCCGGG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	6 cut(s)	45, 60, 417, 944, 968, 1088
StyD4I	CCNGG	8 cut(s)	98, 162, 170, 176, 177, 314, 343, 550
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	3 cut(s)	196, 1172, 1274
TaqI	TCGA	4 cut(s)	258, 288, 888, 919
TatI	WGTACW	4 cut(s)	37, 604, 1119, 1359
TfiI	GAWTC	2 cut(s)	1049, 1058
Tru1I	TTAA	4 cut(s)	899, 1020, 1206, 1341
Tru9I	TTAA	4 cut(s)	899, 1020, 1206, 1341
TscAI	CASTG	4 cut(s)	517, 880, 1279, 1411
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	2 cut(s)	230, 821
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	6 cut(s)	17, 237, 801, 854, 1160, 1207
TspMI	CCCGGG	1 cut(s)	177
TspRI	CASTG	4 cut(s)	517, 880, 1279, 1411
Tth111I	GACNNNGTC	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	121, 181
XapI	RAATTY	3 cut(s)	789, 861, 1113
XbaI	TCTAGA	1 cut(s)	943
XceI	RCATGY	3 cut(s)	395, 611, 647
XhoI	CTCGAG	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	177
XspI	CTAG	6 cut(s)	45, 60, 417, 944, 968, 1088
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.