Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003393.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

58748 .. 64452

Gene Structure 5705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

atggctaaccaagctcccacacttcctcttcttactccttacaaaatgggaaagtttgatctttctcacagagtcgttttagcgccattgactagacagagatcatatggaaatgttccccagccacatgccatcttatattactctcagagaacatctaaagggggtcttctcataactgaagccactggagtttctgacacagcacaagggtatccagatactcctggtatatggacaaaggagcaagttgaagcatggaaacccattgtcaatgctgtacatgctaaagggggtatcttcttctgtcagatttggcatgtggggagggtttcaaatactggctttcagccaaatggacaggttccaatctcttctactgacaagcccataacgccccaagctaatggcgttgatgttgcccagttcacccctcctagacgattaaggacagatgaaattcctcaaattgtcaatgatttcagacttgctgcaaggaatgctatggaagctggttttgatggggttgaaattcatggcgctcatggctaccttatcgatcagtttttaaaagatcaagtaaatgatcgaacagaccaatatggtggatctctagaaaagcgttgccgatttgcactagacattgttgaagctgttgtcaatgagataggagcagataaagttggaattagattatctccatttgctgactatatggaatccgcagattctaatccaaaggaattgggcctttatctagtcaattccttgaacaaatatcgaatcctgtactgccacatggttgagccaagaatgaagacacttggagaaaaaattgaatgtccccacagtctcgtacccatgagaaaggctttcagtggtaccttcattgctgctggtggttttgacaggaaagatgggaacaatgctgtggctgagggccgtgcagatcttatcgcttttggtcgttggttcttggctaatccagatttgccaaagagatttgagcttaatgctcctctgaataagtacaacagagatacattctacatatctgatccagttcttggattctgggttttgtggcaagaaagccttccccagccaatcggttcgggtcaccgacaccagcagcgcgccctcgagtctgatctcggactcggtccgttcctcgccgcaaaagaacggttggatcaatatcaacccgattggtttcacgacccaaaacagctcacggcaggcttgtaccgccacgtggcgaggaagcagctggaacagtcagcgaggtcggggagggagtcggggttttggtcgaggaatttgaggacgtcgaggccttcgtcgtactggcaggggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

452

Amino Acids

50.75

Weight (kDa)

8.96

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 341	1.6e-86	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1331
Acc65I	GGTACC	1 cut(s)	881
AccB1I	GGYRCC	1 cut(s)	881
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccII	CGCG	1 cut(s)	1137
AciI	CCGC	3 cut(s)	723, 1176, 1249
AclWI	GGATC	3 cut(s)	616, 1052, 1200
AcsI	RAATTY	3 cut(s)	459, 531, 1318
AcuI	CTGAAG	1 cut(s)	201
AcvI	CACGTG	1 cut(s)	1255
AcyI	GRCGYC	1 cut(s)	1328
AfaI	GTAC	7 cut(s)	282, 791, 858, 883, 1031, 1247, 1346
AfiI	CCNNNNNNNGG	2 cut(s)	1067, 1255
AgsI	TTSAA	6 cut(s)	254, 336, 530, 650, 772, 839
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	7 cut(s)	14, 404, 512, 653, 1009, 1231, 1270
AluI	AGCT	7 cut(s)	14, 404, 512, 653, 1009, 1231, 1270
Alw26I	GTCTC	1 cut(s)	857
AlwI	GGATC	3 cut(s)	616, 1052, 1200
Ama87I	CYCGRG	1 cut(s)	1142
AoxI	GGCC	3 cut(s)	748, 940, 1334
ApeKI	GCWGC	4 cut(s)	491, 893, 1132, 1267
ApoI	RAATTY	3 cut(s)	459, 531, 1318
Asp700I	GAANNNNTTC	1 cut(s)	1095
Asp718I	GGTACC	1 cut(s)	881
AspLEI	GCGC	4 cut(s)	85, 542, 1137, 1139
AspS9I	GGNCC	3 cut(s)	748, 940, 1163
AsuHPI	GGTGA	2 cut(s)	421, 1112
AvaI	CYCGRG	1 cut(s)	1142
AvaII	GGWCC	1 cut(s)	1163
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	1 cut(s)	881
BbrPI	CACGTG	1 cut(s)	1255
BbsI	GAAGAC	2 cut(s)	161, 824
BbvCI	CCTCAGC	1 cut(s)	936
BbvI	GCAGC	4 cut(s)	478, 880, 1144, 1279
BccI	CCATC	3 cut(s)	140, 515, 911
BceAI	ACGGC	2 cut(s)	927, 1251
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	857
BfaI	CTAG	5 cut(s)	93, 438, 614, 638, 758
BfoI	RGCGCY	2 cut(s)	86, 543
BfuI	GTATCC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	5 cut(s)	492, 894, 1133, 1176, 1268
BlsI	GCNGC	5 cut(s)	493, 895, 1134, 1177, 1269
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	1163
BmeT110I	CYCGRG	1 cut(s)	1142
BmgT120I	GGNCC	3 cut(s)	748, 940, 1163
BmiI	GGNNCC	2 cut(s)	366, 883
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	418
BpiI	GAAGAC	2 cut(s)	161, 824
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	936
Bsa29I	ATCGAT	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	1255
BsaBI	GATNNNNATC	2 cut(s)	732, 1197
BsaHI	GRCGYC	1 cut(s)	1328
BsaXI	ACNNNNNCTCC	2 cut(s)	1289, 1319
Bsc4I	CCNNNNNNNGG	2 cut(s)	1067, 1255
Bse1I	ACTGG	5 cut(s)	193, 346, 424, 1061, 1352
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	2 cut(s)	732, 1197
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	558
BseJI	GATNNNNATC	2 cut(s)	732, 1197
BseLI	CCNNNNNNNGG	2 cut(s)	1067, 1255
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	2 cut(s)	161, 927
BseNI	ACTGG	5 cut(s)	193, 346, 424, 1061, 1352
BsePI	GCGCGC	1 cut(s)	1135
BseRI	GAGGAG	1 cut(s)	1008
BseXI	GCAGC	4 cut(s)	478, 880, 1144, 1279
BseYI	CCCAGC	2 cut(s)	120, 1101
BsgI	GTGCAG	1 cut(s)	966
Bsh1236I	CGCG	1 cut(s)	1137
BshFI	GGCC	3 cut(s)	750, 942, 1336
BshNI	GGYRCC	1 cut(s)	881
BshVI	ATCGAT	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	1142
BslFI	GGGAC	1 cut(s)	828
BslI	CCNNNNNNNGG	2 cut(s)	1067, 1255
BsmAI	GTCTC	1 cut(s)	857
BsmFI	GGGAC	1 cut(s)	828
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	3 cut(s)	750, 942, 1336
BsoBI	CYCGRG	1 cut(s)	1142
Bsp1407I	TGTACA	1 cut(s)	280
BspACI	CCGC	3 cut(s)	723, 1176, 1249
BspANI	GGCC	3 cut(s)	750, 942, 1336
BspCNI	CTCAG	2 cut(s)	160, 928
BspDI	ATCGAT	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	1137
BspLI	GGNNCC	2 cut(s)	366, 883
BspPI	GGATC	3 cut(s)	616, 1052, 1200
BspT107I	GGYRCC	1 cut(s)	881
BsrDI	GCAATG	1 cut(s)	888
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	5 cut(s)	193, 346, 424, 1061, 1352
BssHII	GCGCGC	1 cut(s)	1135
BssNI	GRCGYC	1 cut(s)	1328
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	851, 1188, 1278
Bst6I	CTCTTC	2 cut(s)	33, 379
BstACI	GRCGYC	1 cut(s)	1328
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	1255
BstC8I	GCNNGC	2 cut(s)	1137, 1240
BstDEI	CTNAG	2 cut(s)	147, 936
BstEII	GGTNACC	1 cut(s)	1118
BstFNI	CGCG	1 cut(s)	1137
BstH2I	RGCGCY	2 cut(s)	86, 543
BstHHI	GCGC	4 cut(s)	85, 542, 1137, 1139
BstMAI	GTCTC	1 cut(s)	857
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 284, 394, 500, 509, 546, 1248
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	3 cut(s)	131, 287, 323
BstPI	GGTNACC	1 cut(s)	1118
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	1137
BstV1I	GCAGC	4 cut(s)	478, 880, 1144, 1279
BstV2I	GAAGAC	2 cut(s)	161, 824
BstX2I	RGATCY	2 cut(s)	608, 949
BstXI	CCANNNNNNTGG	2 cut(s)	407, 605
BstYI	RGATCY	2 cut(s)	608, 949
Bsu15I	ATCGAT	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	750, 942, 1336
BsuTUI	ATCGAT	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	186, 883
Cac8I	GCNNGC	2 cut(s)	1137, 1240
CfoI	GCGC	4 cut(s)	85, 542, 1137, 1139
Cfr13I	GGNCC	3 cut(s)	748, 940, 1163
ClaI	ATCGAT	1 cut(s)	558
CpoI	CGGWCCG	1 cut(s)	1163
Csp6I	GTAC	7 cut(s)	281, 790, 857, 882, 1030, 1246, 1345
CspI	CGGWCCG	1 cut(s)	1163
CviAII	CATG	8 cut(s)	128, 258, 284, 320, 536, 545, 799, 862
CviQI	GTAC	7 cut(s)	281, 790, 857, 882, 1030, 1246, 1345
DdeI	CTNAG	2 cut(s)	147, 936
DraI	TTTAAA	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	33, 379
EarI	CTCTTC	2 cut(s)	33, 379
Eco147I	AGGCCT	1 cut(s)	1336
Eco47I	GGWCC	1 cut(s)	1163
Eco57I	CTGAAG	1 cut(s)	201
Eco72I	CACGTG	1 cut(s)	1255
Eco88I	CYCGRG	1 cut(s)	1142
Eco91I	GGTNACC	1 cut(s)	1118
EcoO65I	GGTNACC	1 cut(s)	1118
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	8 cut(s)	131, 261, 287, 323, 539, 548, 802, 865
FalI	AAGNNNNNCTT	4 cut(s)	153, 185, 1080, 1112
FaqI	GGGAC	1 cut(s)	828
FatI	CATG	8 cut(s)	127, 257, 283, 319, 535, 544, 798, 861
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	5 cut(s)	492, 894, 1133, 1176, 1268
Fsp4HI	GCNGC	5 cut(s)	492, 894, 1133, 1176, 1268
FspBI	CTAG	5 cut(s)	93, 438, 614, 638, 758
GlaI	GCGC	4 cut(s)	84, 541, 1136, 1138
GluI	GCNGC	5 cut(s)	492, 894, 1133, 1176, 1268
GsaI	CCCAGC	2 cut(s)	124, 1105
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	2 cut(s)	86, 543
HaeIII	GGCC	3 cut(s)	750, 942, 1336
HhaI	GCGC	4 cut(s)	85, 542, 1137, 1139
Hin1I	GRCGYC	1 cut(s)	1328
Hin1II	CATG	8 cut(s)	131, 261, 287, 323, 539, 548, 802, 865
Hin6I	GCGC	4 cut(s)	83, 540, 1135, 1137
HinP1I	GCGC	4 cut(s)	83, 540, 1135, 1137
HinfI	GANTC	8 cut(s)	72, 719, 728, 783, 1071, 1145, 1158, 1298
HphI	GGTGA	2 cut(s)	421, 1112
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	8 cut(s)	150, 199, 312, 485, 1023, 1057, 1150, 1157
Hpy188III	TCNNGA	4 cut(s)	218, 614, 986, 1217
Hpy8I	GTNNAC	1 cut(s)	429
Hpy99I	CGWCG	2 cut(s)	1333, 1345
HpyAV	CCTTC	3 cut(s)	895, 1106, 1347
HpyCH4III	ACNGT	3 cut(s)	851, 1188, 1278
HpyCH4IV	ACGT	2 cut(s)	1254, 1328
HpyCH4V	TGCA	3 cut(s)	494, 635, 947
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 284, 394, 500, 509, 546, 1248
HpyF3I	CTNAG	2 cut(s)	147, 936
HpySE526I	ACGT	2 cut(s)	1254, 1328
Hsp92I	GRCGYC	1 cut(s)	1328
Hsp92II	CATG	8 cut(s)	131, 261, 287, 323, 539, 548, 802, 865
HspAI	GCGC	4 cut(s)	83, 540, 1135, 1137
KpnI	GGTACC	1 cut(s)	885
LmnI	GCTCC	4 cut(s)	19, 244, 671, 1021
Lsp1109I	GCAGC	4 cut(s)	478, 880, 1144, 1279
MaeI	CTAG	5 cut(s)	93, 438, 614, 638, 758
MaeII	ACGT	2 cut(s)	1254, 1328
MaeIII	GTNAC	1 cut(s)	1118
MboII	GAAGA	6 cut(s)	20, 161, 292, 295, 366, 829
MflI	RGATCY	2 cut(s)	608, 949
MluCI	AATT	8 cut(s)	459, 468, 531, 687, 743, 763, 834, 1318
MlyI	GAGTC	4 cut(s)	81, 1152, 1154, 1307
MmeI	TCCRAC	2 cut(s)	664, 1170
MroXI	GAANNNNTTC	1 cut(s)	1095
MseI	TTAA	3 cut(s)	446, 569, 1011
MspA1I	CMGCKG	1 cut(s)	1270
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	1137
MwoI	GCNNNNNNNGC	7 cut(s)	11, 284, 394, 500, 509, 546, 1248
NdeI	CATATG	1 cut(s)	106
NlaIII	CATG	8 cut(s)	131, 261, 287, 323, 539, 548, 802, 865
NlaIV	GGNNCC	2 cut(s)	366, 883
NmuCI	GTSAC	1 cut(s)	1118
NspI	RCATGY	3 cut(s)	131, 287, 323
PaeR7I	CTCGAG	1 cut(s)	1142
PauI	GCGCGC	1 cut(s)	1135
PceI	AGGCCT	1 cut(s)	1336
PcsI	WCGNNNNNNNCGW	1 cut(s)	1337
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	1095
PfeI	GAWTC	4 cut(s)	719, 728, 783, 1071
PflFI	GACNNNGTC	1 cut(s)	1161
PflMI	CCANNNNNTGG	1 cut(s)	1067
PkrI	GCNGC	5 cut(s)	493, 895, 1134, 1177, 1269
PleI	GAGTC	4 cut(s)	80, 1152, 1153, 1306
PmaCI	CACGTG	1 cut(s)	1255
PmlI	CACGTG	1 cut(s)	1255
PpsI	GAGTC	4 cut(s)	80, 1152, 1153, 1306
Ppu21I	YACGTR	1 cut(s)	1255
Psp6I	CCWGG	1 cut(s)	226
PspCI	CACGTG	1 cut(s)	1255
PspEI	GGTNACC	1 cut(s)	1118
PspFI	CCCAGC	2 cut(s)	120, 1101
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	366, 883
PspPI	GGNCC	3 cut(s)	748, 940, 1163
PspXI	VCTCGAGB	1 cut(s)	1142
PsuI	RGATCY	2 cut(s)	608, 949
PsyI	GACNNNGTC	1 cut(s)	1161
PteI	GCGCGC	1 cut(s)	1135
PvuII	CAGCTG	1 cut(s)	1270
RsaI	GTAC	7 cut(s)	282, 791, 858, 883, 1031, 1247, 1346
RsaNI	GTAC	7 cut(s)	281, 790, 857, 882, 1030, 1246, 1345
Rsr2I	CGGWCCG	1 cut(s)	1163
RsrII	CGGWCCG	1 cut(s)	1163
SaqAI	TTAA	3 cut(s)	446, 569, 1011
SatI	GCNGC	5 cut(s)	492, 894, 1133, 1176, 1268
Sau96I	GGNCC	3 cut(s)	748, 940, 1163
SchI	GAGTC	4 cut(s)	81, 1152, 1154, 1307
ScrFI	CCNGG	1 cut(s)	228
Sfr274I	CTCGAG	1 cut(s)	1142
SinI	GGWCC	1 cut(s)	1163
SlaI	CTCGAG	1 cut(s)	1142
SmlI	CTYRAG	1 cut(s)	1142
SmoI	CTYRAG	1 cut(s)	1142
Sse9I	AATT	8 cut(s)	459, 468, 531, 687, 743, 763, 834, 1318
SseBI	AGGCCT	1 cut(s)	1336
SsiI	CCGC	3 cut(s)	723, 1176, 1249
SspMI	CTAG	5 cut(s)	93, 438, 614, 638, 758
StuI	AGGCCT	1 cut(s)	1336
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	851, 1188, 1278
TaiI	ACGT	2 cut(s)	1257, 1331
TaqI	TCGA	6 cut(s)	558, 589, 781, 1143, 1313, 1331
TaqII	GACCGA	1 cut(s)	1151
TasI	AATT	8 cut(s)	459, 468, 531, 687, 743, 763, 834, 1318
TatI	WGTACW	3 cut(s)	280, 789, 1029
TauI	GCSGC	1 cut(s)	1178
TfiI	GAWTC	4 cut(s)	719, 728, 783, 1071
Tru1I	TTAA	3 cut(s)	446, 569, 1011
Tru9I	TTAA	3 cut(s)	446, 569, 1011
TscAI	CASTG	2 cut(s)	193, 883
TseFI	GTSAC	1 cut(s)	1118
TseI	GCWGC	4 cut(s)	491, 893, 1132, 1267
Tsp45I	GTSAC	1 cut(s)	1118
TspDTI	ATGAA	4 cut(s)	471, 524, 830, 877
TspGWI	ACGGA	1 cut(s)	1155
TspRI	CASTG	2 cut(s)	193, 883
Tth111I	GACNNNGTC	1 cut(s)	1161
Van91I	CCANNNNNTGG	1 cut(s)	1067
VpaK11BI	GGWCC	1 cut(s)	1163
XapI	RAATTY	3 cut(s)	459, 531, 1318
XbaI	TCTAGA	1 cut(s)	613
XceI	RCATGY	3 cut(s)	131, 287, 323
XhoI	CTCGAG	1 cut(s)	1142
XmnI	GAANNNNTTC	1 cut(s)	1095
XspI	CTAG	5 cut(s)	93, 438, 614, 638, 758
ZraI	GACGTC	1 cut(s)	1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.