Rmu_sc0003396.1_g000034

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003396.1
N/A
Physical Location & Seq
Reverse (-)
115132 .. 115705
574 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 507 bp
atggatatcacaagtgggtttgtgacgtcgccaacatctcaggttgatggaatcctggatacgattctcgagtttagccaggacgtgctagctgttgagcaagctcaagttttggaagcaaatagagcagccttggaggcaaataagaaggccccagaaggctgcgggtctcactcgaaggaaagatttggcaacatctgtgactccttgctttatgaactagaagtgagatggcataccctctgcttttgtgatttcaagtcagttattgactacaactcggaagcacttcgtattaaatccttaatggaattatgtggaaaatatatcgcagatgcgatgttgattgagaggactctctctaccttccccgtctctgcattgatggttgcaaagaactatcgaatcgatgttactgcaggatgggtcacaagatttcatgagatcattggagctatgaatgccgctgaaaatcatgacaacatccttgtgaagaactataattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

168

Amino Acids

18.76

Weight (kDa)

4.94

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AciI CCGC 2 cut(s) 165, 465
AcyI GRCGYC 1 cut(s) 26
AgsI TTSAA 1 cut(s) 259
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 2 cut(s) 54, 78
AluBI AGCT 3 cut(s) 92, 104, 455
AluI AGCT 3 cut(s) 92, 104, 455
Alw26I GTCTC 2 cut(s) 174, 379
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 128, 162
Asp700I GAANNNNTTC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 151
AsuNHI GCTAGC 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 68
BbvI GCAGC 2 cut(s) 140, 149
BccI CCATC 4 cut(s) 41, 225, 379, 417
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 2 cut(s) 56, 80
BciVI GTATCC 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 174, 379
BfaI CTAG 2 cut(s) 89, 221
BfmI CTRYAG 1 cut(s) 417
BfuI GTATCC 1 cut(s) 52
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 3 cut(s) 129, 163, 465
BlsI GCNGC 3 cut(s) 130, 164, 466
Bme1390I CCNGG 2 cut(s) 56, 80
BmeT110I CYCGRG 1 cut(s) 68
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 2 cut(s) 56, 80
BmsI GCATC 1 cut(s) 325
BmtI GCTAGC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 132
BseBI CCWGG 2 cut(s) 56, 80
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 428, 483
BseMII CTCAG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 140, 149
BshFI GGCC 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 174, 379
BsmBI CGTCTC 1 cut(s) 379
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 1 cut(s) 152
Bso31I GGTCTC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 68
Bsp143I GATC 1 cut(s) 444
BspACI CCGC 2 cut(s) 165, 465
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 52
BspDI ATCGAT 1 cut(s) 408
BspHI TCATGA 2 cut(s) 439, 475
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 421
BspOI GCTAGC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 444
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 56, 80
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 90, 102
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 428, 483
BstKTI GATC 1 cut(s) 447
BstMAI GTCTC 2 cut(s) 174, 379
BstMBI GATC 1 cut(s) 444
BstMWI GCNNNNNNNGC 3 cut(s) 125, 137, 461
BstNI CCWGG 2 cut(s) 56, 80
BstSCI CCNGG 2 cut(s) 54, 78
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 2 cut(s) 140, 149
Bsu15I ATCGAT 1 cut(s) 408
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 152
BsuTUI ATCGAT 1 cut(s) 408
BtgZI GCGATG 1 cut(s) 353
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 428, 483
Cac8I GCNNGC 2 cut(s) 90, 102
CciI TCATGA 2 cut(s) 439, 475
Cfr13I GGNCC 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 408
CviAII CATG 2 cut(s) 440, 476
CviJI RGCY 7 cut(s) 78, 92, 104, 131, 152, 162, 455
CviKI_1 RGCY 7 cut(s) 78, 92, 104, 131, 152, 162, 455
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 446
DpnII GATC 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 54, 78
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 379
FaeI CATG 2 cut(s) 443, 479
FaiI YATR 8 cut(s) 216, 237, 316, 327, 441, 458, 477, 501
FatI CATG 2 cut(s) 439, 475
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 3 cut(s) 129, 163, 465
FokI GGATG 2 cut(s) 435, 470
Fsp4HI GCNGC 3 cut(s) 129, 163, 465
FspBI CTAG 2 cut(s) 89, 221
GluI GCNGC 3 cut(s) 129, 163, 465
HaeIII GGCC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 2 cut(s) 443, 479
HinfI GANTC 5 cut(s) 51, 64, 203, 355, 405
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 3 cut(s) 68, 440, 476
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 4 cut(s) 142, 152, 172, 376
HpyCH4IV ACGT 2 cut(s) 26, 84
HpyCH4V TGCA 3 cut(s) 380, 392, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 137, 461
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 2 cut(s) 26, 84
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 2 cut(s) 443, 479
Kzo9I GATC 1 cut(s) 444
LmnI GCTCC 1 cut(s) 452
LpnPI CCDG 7 cut(s) 26, 41, 65, 68, 92, 168, 405
Lsp1109I GCAGC 2 cut(s) 140, 149
LweI GCATC 1 cut(s) 325
MaeI CTAG 2 cut(s) 89, 221
MaeII ACGT 2 cut(s) 26, 84
MaeIII GTNAC 4 cut(s) 22, 200, 412, 427
MalI GATC 1 cut(s) 446
MboI GATC 1 cut(s) 444
MboII GAAGA 1 cut(s) 505
MluCI AATT 2 cut(s) 311, 502
MlyI GAGTC 2 cut(s) 197, 349
MnlI CCTC 3 cut(s) 130, 251, 345
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 2 cut(s) 297, 305
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 56, 80
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 2 cut(s) 56, 80
MwoI GCNNNNNNNGC 3 cut(s) 125, 137, 461
NdeII GATC 1 cut(s) 444
NheI GCTAGC 1 cut(s) 88
NlaIII CATG 2 cut(s) 443, 479
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 3 cut(s) 22, 200, 427
PaeR7I CTCGAG 1 cut(s) 68
PagI TCATGA 2 cut(s) 439, 475
PctI GAATGC 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 3 cut(s) 51, 64, 405
PfoI TCCNGGA 1 cut(s) 54
PkrI GCNGC 3 cut(s) 130, 164, 466
PleI GAGTC 2 cut(s) 197, 349
PpsI GAGTC 2 cut(s) 197, 349
Psp6I CCWGG 2 cut(s) 54, 78
PspGI CCWGG 2 cut(s) 54, 78
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 151
PstI CTGCAG 1 cut(s) 421
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 297, 305
SatI GCNGC 3 cut(s) 129, 163, 465
Sau3AI GATC 1 cut(s) 444
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 2 cut(s) 197, 349
ScrFI CCNGG 2 cut(s) 56, 80
SetI ASST 7 cut(s) 29, 45, 87, 94, 106, 368, 457
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 417
Sfr274I CTCGAG 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 2 cut(s) 68, 105
SmoI CTYRAG 2 cut(s) 68, 105
Sse9I AATT 2 cut(s) 311, 502
SsiI CCGC 2 cut(s) 165, 465
SspMI CTAG 2 cut(s) 89, 221
StyD4I CCNGG 2 cut(s) 54, 78
StyI CCWWGG 1 cut(s) 132
TaiI ACGT 2 cut(s) 29, 87
TaqI TCGA 4 cut(s) 69, 176, 403, 408
TasI AATT 2 cut(s) 311, 502
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 3 cut(s) 51, 64, 405
Tru1I TTAA 2 cut(s) 297, 305
Tru9I TTAA 2 cut(s) 297, 305
TseFI GTSAC 3 cut(s) 22, 200, 427
TseI GCWGC 2 cut(s) 128, 162
Tsp45I GTSAC 3 cut(s) 22, 200, 427
TspDTI ATGAA 3 cut(s) 231, 428, 473
XhoI CTCGAG 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 2 cut(s) 89, 221
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.