Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003413.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

319288 .. 334772

Gene Structure 15485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgtgcagcaacagattcattccgtgtcggtcgtcgtccaggctccaccagtttgggctgaatgacaaggcgttgccggtgaaggacagcgggaacgaggcctatgagagcattttgatgccgaatctggatcagcaaggccacctccagaaggtatgtactagcttatctcttccttctttttcgaagtttgagaaacaagatggggttgtattgatggctactactagaaatttcaagcaaattgatgatgccttaaagcggcctggtcgcatggatgaagtatttcaacttcaaaggccaactcaagaagaaagggagaagatactacacatagctgcaaaagaaacaatggataatgagctcattgattttgtagactggagaaagggctatttggatatcgctttggaagaggtgtgtgccgagattgtgatcaagtttaggagacgggctttgggagcaaaagagactgtatgcaaagaagtgcgtgtattattcttctgctgctgttcctgtgtacattatttgggattatctcactgtgtcattgctattcaggttgggaagaggtccgtgcgaaacctaagctacactgttgcgaatagagagtcgtcgaccgagacaactgaaaaaaaaaccctaatgactatacatcacgagatacaggactgtagaagatcaggctgccattgctttttcgcttttcccgtgtcttgtttcaaggtgaagtttcaatttcgtccgagtaatcctcgctttgcttccgtctccagagttttcactcatattcagcctgaagaagatctcaagtccctatttgcgtccttggctgctcagtcacacagcgacggccaattcatctatccttcggtttttcaggtcaattgctttacttcctttccttttgttctgggagagtttcaaattggattggggtttgcagaagcctcaaggtttcaccgattgcttttgagcttgaaccaggtaactaatagtttggatcaactccaactacaattggagcaactacttttttacattactccatttacgctggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

354

Amino Acids

40.51

Weight (kDa)

8.32

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	378, 617
AciI	CCGC	2 cut(s)	90, 262
AclWI	GGATC	2 cut(s)	138, 1011
AcoI	YGGCCR	1 cut(s)	853
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	819
AfaI	GTAC	2 cut(s)	160, 522
AfiI	CCNNNNNNNGG	2 cut(s)	151, 261
AgsI	TTSAA	7 cut(s)	238, 290, 296, 724, 737, 926, 982
AjnI	CCWGG	3 cut(s)	38, 265, 984
AluBI	AGCT	5 cut(s)	165, 338, 364, 591, 978
AluI	AGCT	5 cut(s)	165, 338, 364, 591, 978
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	4 cut(s)	442, 464, 617, 775
AlwI	GGATC	2 cut(s)	138, 1011
AoxI	GGCC	5 cut(s)	99, 139, 263, 299, 853
ApeKI	GCWGC	5 cut(s)	6, 338, 507, 687, 833
ApoI	RAATTY	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	573
AsuHPI	GGTGA	3 cut(s)	91, 739, 953
AsuII	TTCGAA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	366
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
BauI	CACGAG	1 cut(s)	659
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	5 cut(s)	18, 325, 494, 674, 820
BccI	CCATC	2 cut(s)	197, 211
BceAI	ACGGC	1 cut(s)	868
BciT130I	CCWGG	3 cut(s)	40, 267, 986
BclI	TGATCA	1 cut(s)	435
BcoDI	GTCTC	4 cut(s)	442, 464, 617, 775
BfaI	CTAG	2 cut(s)	162, 228
BfmI	CTRYAG	1 cut(s)	673
BglII	AGATCT	1 cut(s)	805
BisI	GCNGC	6 cut(s)	7, 263, 339, 508, 688, 834
BlsI	GCNGC	6 cut(s)	8, 264, 340, 509, 689, 835
Bme1390I	CCNGG	3 cut(s)	40, 267, 986
Bme18I	GGWCC	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	3 cut(s)	40, 267, 986
BmsI	GCATC	2 cut(s)	108, 241
BplI	GAGNNNNNCTC	2 cut(s)	739, 771
BpmI	CTGGAG	3 cut(s)	131, 403, 757
Bpu10I	CCTNAGC	1 cut(s)	587
Bpu14I	TTCGAA	1 cut(s)	185
BpuEI	CTTGAG	3 cut(s)	291, 794, 937
BsaBI	GATNNNNATC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	828
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 261
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	49, 386
Bse3DI	GCAATG	2 cut(s)	549, 691
Bse8I	GATNNNNATC	1 cut(s)	434
BseBI	CCWGG	3 cut(s)	40, 267, 986
BseDI	CCNNGG	1 cut(s)	828
BseGI	GGATG	1 cut(s)	283
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	2 cut(s)	151, 261
BseMI	GCAATG	2 cut(s)	549, 691
BseMII	CTCAG	1 cut(s)	851
BseNI	ACTGG	2 cut(s)	49, 386
BseXI	GCAGC	5 cut(s)	18, 325, 494, 674, 820
BsgI	GTGCAG	1 cut(s)	25
Bsh1285I	CGRYCG	2 cut(s)	32, 621
BshFI	GGCC	5 cut(s)	101, 141, 265, 301, 855
BsiEI	CGRYCG	2 cut(s)	32, 621
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	2 cut(s)	151, 261
BsmAI	GTCTC	4 cut(s)	442, 464, 617, 775
BsmBI	CGTCTC	2 cut(s)	442, 775
BsmFI	GGGAC	1 cut(s)	799
BsnI	GGCC	5 cut(s)	101, 141, 265, 301, 855
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	5 cut(s)	130, 435, 680, 805, 1003
BspACI	CCGC	2 cut(s)	90, 262
BspANI	GGCC	5 cut(s)	101, 141, 265, 301, 855
BspCNI	CTCAG	1 cut(s)	850
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	138, 1011
BspT104I	TTCGAA	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	549, 691
BsrFI	RCCGGY	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	49, 386
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	5 cut(s)	130, 435, 680, 805, 1003
BssSI	CACGAG	1 cut(s)	659
BssT1I	CCWWGG	1 cut(s)	828
Bst2BI	CACGAG	1 cut(s)	659
Bst2UI	CCWGG	3 cut(s)	40, 267, 986
Bst4CI	ACNGT	4 cut(s)	475, 545, 598, 674
Bst6I	CTCTTC	3 cut(s)	177, 408, 563
BstAUI	TGTACA	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	1059
BstDEI	CTNAG	3 cut(s)	587, 837, 1062
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	5 cut(s)	133, 438, 683, 808, 1006
BstMAI	GTCTC	4 cut(s)	442, 464, 617, 775
BstMBI	GATC	5 cut(s)	130, 435, 680, 805, 1003
BstMCI	CGRYCG	2 cut(s)	32, 621
BstMWI	GCNNNNNNNGC	3 cut(s)	461, 693, 830
BstNI	CCWGG	3 cut(s)	40, 267, 986
BstSCI	CCNGG	3 cut(s)	38, 265, 984
BstSFI	CTRYAG	1 cut(s)	673
BstV1I	GCAGC	5 cut(s)	18, 325, 494, 674, 820
BstX2I	RGATCY	1 cut(s)	805
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	805
BsuRI	GGCC	5 cut(s)	101, 141, 265, 301, 855
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	541, 594
Cac8I	GCNNGC	1 cut(s)	1059
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	573
CseI	GACGC	1 cut(s)	813
CsiI	ACCWGGT	1 cut(s)	984
Csp6I	GTAC	2 cut(s)	159, 521
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	2 cut(s)	159, 521
DdeI	CTNAG	3 cut(s)	587, 837, 1062
DpnI	GATC	5 cut(s)	132, 437, 682, 807, 1005
DpnII	GATC	5 cut(s)	130, 435, 680, 805, 1003
EaeI	YGGCCR	1 cut(s)	853
Eam1104I	CTCTTC	3 cut(s)	177, 408, 563
EarI	CTCTTC	3 cut(s)	177, 408, 563
Ecl136II	GAGCTC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	828
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	573
Eco53kI	GAGCTC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	819
EcoICRI	GAGCTC	1 cut(s)	364
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRII	CCWGG	3 cut(s)	38, 265, 984
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	828
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	828
Esp3I	CGTCTC	2 cut(s)	442, 775
FaeI	CATG	1 cut(s)	277
FaiI	YATR	7 cut(s)	105, 157, 275, 335, 478, 653, 789
FaqI	GGGAC	1 cut(s)	799
FatI	CATG	1 cut(s)	273
FauI	CCCGC	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	435
FblI	GTMKAC	2 cut(s)	378, 617
Fnu4HI	GCNGC	6 cut(s)	7, 263, 339, 508, 688, 834
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	6 cut(s)	7, 263, 339, 508, 688, 834
FspBI	CTAG	2 cut(s)	162, 228
GluI	GCNGC	6 cut(s)	7, 263, 339, 508, 688, 834
GsuI	CTGGAG	3 cut(s)	131, 403, 757
HaeIII	GGCC	5 cut(s)	101, 141, 265, 301, 855
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	813
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HinfI	GANTC	3 cut(s)	15, 124, 611
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	3 cut(s)	91, 739, 953
Hpy166II	GTNNAC	3 cut(s)	379, 521, 618
Hpy188I	TCNGA	1 cut(s)	747
Hpy188III	TCNNGA	5 cut(s)	128, 148, 308, 659, 774
Hpy8I	GTNNAC	3 cut(s)	379, 521, 618
Hpy99I	CGWCG	3 cut(s)	37, 619, 854
HpyAV	CCTTC	4 cut(s)	76, 145, 186, 879
HpyCH4III	ACNGT	4 cut(s)	475, 545, 598, 674
HpyCH4V	TGCA	4 cut(s)	6, 341, 480, 944
HpyF10VI	GCNNNNNNNGC	3 cut(s)	461, 693, 830
HpyF3I	CTNAG	3 cut(s)	587, 837, 1062
Hsp92II	CATG	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	5 cut(s)	130, 435, 680, 805, 1003
LmnI	GCTCC	3 cut(s)	48, 461, 1024
Lsp1109I	GCAGC	5 cut(s)	18, 325, 494, 674, 820
LweI	GCATC	2 cut(s)	108, 241
MabI	ACCWGGT	1 cut(s)	984
MaeI	CTAG	2 cut(s)	162, 228
MaeIII	GTNAC	2 cut(s)	840, 988
MalI	GATC	5 cut(s)	132, 437, 682, 807, 1005
MboI	GATC	5 cut(s)	130, 435, 680, 805, 1003
MboII	GAAGA	9 cut(s)	164, 323, 334, 425, 493, 580, 690, 812, 815
MfeI	CAATTG	2 cut(s)	886, 1019
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	7 cut(s)	232, 243, 737, 857, 886, 927, 1019
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	1036
MnlI	CCTC	6 cut(s)	91, 155, 409, 564, 765, 961
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	3 cut(s)	40, 267, 986
MunI	CAATTG	2 cut(s)	886, 1019
MvaI	CCWGG	3 cut(s)	40, 267, 986
MwoI	GCNNNNNNNGC	3 cut(s)	461, 693, 830
NdeII	GATC	5 cut(s)	130, 435, 680, 805, 1003
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	1 cut(s)	840
NspV	TTCGAA	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	15, 124
PkrI	GCNGC	6 cut(s)	8, 264, 340, 509, 689, 835
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Psp124BI	GAGCTC	1 cut(s)	366
Psp6I	CCWGG	3 cut(s)	38, 265, 984
PspGI	CCWGG	3 cut(s)	38, 265, 984
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	573
PsuI	RGATCY	1 cut(s)	805
RsaI	GTAC	2 cut(s)	160, 522
RsaNI	GTAC	2 cut(s)	159, 521
RseI	CAYNNNNRTG	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	616
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	6 cut(s)	7, 263, 339, 508, 688, 834
Sau3AI	GATC	5 cut(s)	130, 435, 680, 805, 1003
Sau96I	GGNCC	1 cut(s)	573
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	3 cut(s)	40, 267, 986
SduI	GDGCHC	1 cut(s)	366
SexAI	ACCWGGT	1 cut(s)	984
SfaNI	GCATC	2 cut(s)	108, 241
SfcI	CTRYAG	1 cut(s)	673
SfuI	TTCGAA	1 cut(s)	185
SinI	GGWCC	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	3 cut(s)	306, 809, 952
SmoI	CTYRAG	3 cut(s)	306, 809, 952
Sse9I	AATT	7 cut(s)	232, 243, 737, 857, 886, 927, 1019
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	2 cut(s)	90, 262
SspMI	CTAG	2 cut(s)	162, 228
SstI	GAGCTC	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	3 cut(s)	38, 265, 984
StyI	CCWWGG	1 cut(s)	828
TaaI	ACNGT	4 cut(s)	475, 545, 598, 674
TaqI	TCGA	2 cut(s)	185, 617
TaqII	GACCGA	2 cut(s)	18, 635
TasI	AATT	7 cut(s)	232, 243, 737, 857, 886, 927, 1019
TatI	WGTACW	2 cut(s)	158, 520
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	15, 124
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	2 cut(s)	548, 601
TseFI	GTSAC	1 cut(s)	840
TseI	GCWGC	5 cut(s)	6, 338, 507, 687, 833
Tsp45I	GTSAC	1 cut(s)	840
TspDTI	ATGAA	3 cut(s)	7, 294, 850
TspGWI	ACGGA	3 cut(s)	12, 565, 757
TspRI	CASTG	2 cut(s)	548, 601
VpaK11BI	GGWCC	1 cut(s)	573
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	232
XmiI	GTMKAC	2 cut(s)	378, 617
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	2 cut(s)	162, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.