Rmu_sc0003429.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003429.1
N/A
Physical Location & Seq
Reverse (-)
14938 .. 15249
312 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
atgtcgaaactaaagctcgactatcctatgcttgattcagctagctcggaataccatagttgggtcaccgatgttgagaaccatctcacttcaaaatggatcttgcctataattcaagcaccaaacctggacctcttatttgagccgacgcctataaaaaattcaactgcactcatcttgatgagatgccacatggataaatggctctggatggagtacatgtatatcaaggactcgatagaattatgggtggcgctacaaaagcgttttggcgatgtccaaaattctctcattcctgacttgaaggtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

103

Amino Acids

12.15

Weight (kDa)

5.47

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 2 cut(s) 160, 283
AcyI GRCGYC 1 cut(s) 149
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 61
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 4 cut(s) 93, 116, 165, 304
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 3 cut(s) 16, 41, 45
AluI AGCT 3 cut(s) 16, 41, 45
AlwI GGATC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 160, 283
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 58
AsuNHI GCTAGC 1 cut(s) 41
AvaII GGWCC 1 cut(s) 130
BccI CCATC 2 cut(s) 90, 205
BciT130I CCWGG 1 cut(s) 128
BfaI CTAG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 176
BmtI GCTAGC 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 61
Bsp143I GATC 1 cut(s) 99
BspOI GCTAGC 1 cut(s) 45
BspPI GGATC 1 cut(s) 107
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 43
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 223
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 193, 220
CviJI RGCY 5 cut(s) 16, 41, 45, 145, 205
CviKI_1 RGCY 5 cut(s) 16, 41, 45, 145, 205
CviQI GTAC 1 cut(s) 217
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 130
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 196, 223
FaiI YATR 8 cut(s) 29, 57, 110, 155, 194, 221, 225, 247
FatI CATG 2 cut(s) 192, 219
FokI GGATG 1 cut(s) 223
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 257
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 2 cut(s) 196, 223
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 2 cut(s) 35, 233
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 3 cut(s) 178, 208, 296
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 2 cut(s) 196, 223
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 113, 140, 193
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MflI RGATCY 1 cut(s) 99
MluCI AATT 4 cut(s) 111, 160, 242, 283
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 1 cut(s) 143
MseI TTAA 1 cut(s) 310
MslI CAYNNNNRTG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeII GATC 1 cut(s) 99
NheI GCTAGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 196, 223
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 223
PciI ACATGT 1 cut(s) 219
PfeI GAWTC 1 cut(s) 35
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 126
PspEI GGTNACC 1 cut(s) 64
PspGI CCWGG 1 cut(s) 126
PspPI GGNCC 1 cut(s) 130
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 1 cut(s) 310
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 128
SetI ASST 6 cut(s) 18, 43, 47, 129, 135, 309
SfaNI GCATC 1 cut(s) 176
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 4 cut(s) 111, 160, 242, 283
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 126
TaqI TCGA 3 cut(s) 5, 18, 236
TasI AATT 4 cut(s) 111, 160, 242, 283
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 2 cut(s) 160, 283
XceI RCATGY 1 cut(s) 223
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.