Rmu_sc0003430.1_g000011

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003430.1
N/A
Physical Location & Seq
Reverse (-)
33531 .. 34396
866 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
atgatatttttaaaagaaagtattctgacacagtatacggctaatcctaccattgatcggaaccctcctcaagtagggtctcctcacgtcctgtataagacggctttgaaggatttgatttcccaaaataggcctcaagtggtattcctttgtgaaacaaaaatcagtcgcgatttggagtttaagtcgctgagttctacactaggttttgtgaattcagaagcggtcttgagtgatggccaatctggcgggcttggcatgttttggaacgatgatcttcatgtccaacgaggaacaaagtctacacatcacatcaatttggttgtgttggggaatccaaacgaaccaaaatggaggttaaccggtttttatggctactccagaaaggtggatagcgataagtcgtggcaattgttacgcgatcttgctgatcttgactcacttccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

149

Amino Acids

16.78

Weight (kDa)

6.9

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 35, 302
AccII CGCG 2 cut(s) 171, 420
AciI CCGC 2 cut(s) 224, 249
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 57, 74, 129
AgeI ACCGGT 1 cut(s) 362
AgsI TTSAA 1 cut(s) 109
AjiI CACGTC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 2 cut(s) 131, 238
ApoI RAATTY 1 cut(s) 214
AsiGI ACCGGT 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 21
BalI TGGCCA 1 cut(s) 240
BccI CCATC 1 cut(s) 230
BceAI ACGGC 2 cut(s) 54, 117
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 203, 448
BglI GCCNNNNNGGC 1 cut(s) 246
BmgBI CACGTC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 364
BpuEI CTTGAG 3 cut(s) 54, 120, 250
BsaI GGTCTC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 74, 129
Bse118I RCCGGY 1 cut(s) 362
BseLI CCNNNNNNNGG 3 cut(s) 57, 74, 129
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 2 cut(s) 57, 72
Bsh1236I CGCG 2 cut(s) 171, 420
BshFI GGCC 2 cut(s) 133, 240
BshTI ACCGGT 1 cut(s) 362
BsiSI CCGG 1 cut(s) 363
BslI CCNNNNNNNGG 3 cut(s) 57, 74, 129
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 2 cut(s) 133, 240
Bso31I GGTCTC 1 cut(s) 84
Bsp143I GATC 4 cut(s) 55, 274, 421, 430
Bsp68I TCGCGA 1 cut(s) 171
BspACI CCGC 2 cut(s) 224, 249
BspANI GGCC 2 cut(s) 133, 240
BspCNI CTCAG 1 cut(s) 183
BspFNI CGCG 2 cut(s) 171, 420
BspLI GGNNCC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 362
BssMI GATC 4 cut(s) 55, 274, 421, 430
BssNAI GTATAC 1 cut(s) 36
Bst1107I GTATAC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 191
BstENI CCTNNNNNAGG 1 cut(s) 72
BstFNI CGCG 2 cut(s) 171, 420
BstKTI GATC 4 cut(s) 58, 277, 424, 433
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 4 cut(s) 55, 274, 421, 430
BstMWI GCNNNNNNNGC 2 cut(s) 246, 255
BstNSI RCATGY 1 cut(s) 262
BstUI CGCG 2 cut(s) 171, 420
BstXI CCANNNNNNTGG 1 cut(s) 388
BstZ17I GTATAC 1 cut(s) 36
BsuRI GGCC 2 cut(s) 133, 240
BtrI CACGTC 1 cut(s) 88
BtuMI TCGCGA 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 362
CspAI ACCGGT 1 cut(s) 362
CviAII CATG 2 cut(s) 259, 281
CviJI RGCY 6 cut(s) 41, 104, 133, 240, 253, 375
CviKI_1 RGCY 6 cut(s) 41, 104, 133, 240, 253, 375
DdeI CTNAG 1 cut(s) 191
DpnI GATC 4 cut(s) 57, 276, 423, 432
DpnII GATC 4 cut(s) 55, 274, 421, 430
DraI TTTAAA 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 214
FaeI CATG 2 cut(s) 262, 284
FaiI YATR 5 cut(s) 36, 96, 260, 282, 372
FatI CATG 2 cut(s) 258, 280
FauI CCCGC 1 cut(s) 242
FblI GTMKAC 2 cut(s) 35, 302
FspBI CTAG 2 cut(s) 203, 448
GsuI CTGGAG 1 cut(s) 364
HaeIII GGCC 2 cut(s) 133, 240
HapII CCGG 1 cut(s) 363
Hin1II CATG 2 cut(s) 262, 284
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 2 cut(s) 334, 437
HpaI GTTAAC 1 cut(s) 360
HpaII CCGG 1 cut(s) 363
Hpy166II GTNNAC 3 cut(s) 36, 303, 360
Hpy188I TCNGA 3 cut(s) 27, 60, 220
Hpy188III TCNNGA 4 cut(s) 170, 229, 381, 434
Hpy8I GTNNAC 3 cut(s) 36, 303, 360
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4IV ACGT 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 2 cut(s) 246, 255
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 2 cut(s) 262, 284
KspAI GTTAAC 1 cut(s) 360
Kzo9I GATC 4 cut(s) 55, 274, 421, 430
LpnPI CCDG 4 cut(s) 104, 231, 376, 394
MaeI CTAG 2 cut(s) 203, 448
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 414
MalI GATC 4 cut(s) 57, 276, 423, 432
MboI GATC 4 cut(s) 55, 274, 421, 430
MboII GAAGA 1 cut(s) 269
MfeI CAATTG 1 cut(s) 410
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 3 cut(s) 214, 316, 410
MluNI TGGCCA 1 cut(s) 240
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 6 cut(s) 75, 78, 93, 144, 284, 348
Mox20I TGGCCA 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 21
MscI TGGCCA 1 cut(s) 240
MseI TTAA 3 cut(s) 11, 183, 359
Msp20I TGGCCA 1 cut(s) 240
MspI CCGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 410
MvnI CGCG 2 cut(s) 171, 420
MwoI GCNNNNNNNGC 2 cut(s) 246, 255
NdeII GATC 4 cut(s) 55, 274, 421, 430
NlaIII CATG 2 cut(s) 262, 284
NlaIV GGNNCC 1 cut(s) 62
NruI TCGCGA 1 cut(s) 171
NspI RCATGY 1 cut(s) 262
PceI AGGCCT 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 334
PinAI ACCGGT 1 cut(s) 362
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 62
PsrI GAACNNNNNNTAC 2 cut(s) 286, 318
RruI TCGCGA 1 cut(s) 171
SaqAI TTAA 3 cut(s) 11, 183, 359
Sau3AI GATC 4 cut(s) 55, 274, 421, 430
SchI GAGTC 1 cut(s) 431
SetI ASST 4 cut(s) 90, 208, 359, 390
SmlI CTYRAG 3 cut(s) 69, 135, 229
SmoI CTYRAG 3 cut(s) 69, 135, 229
Sse9I AATT 3 cut(s) 214, 316, 410
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 2 cut(s) 224, 249
SspMI CTAG 2 cut(s) 203, 448
StuI AGGCCT 1 cut(s) 133
TaaI ACNGT 1 cut(s) 33
TaiI ACGT 1 cut(s) 90
TasI AATT 3 cut(s) 214, 316, 410
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 3 cut(s) 11, 183, 359
Tru9I TTAA 3 cut(s) 11, 183, 359
TspDTI ATGAA 1 cut(s) 269
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 1 cut(s) 214
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 2 cut(s) 35, 302
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 2 cut(s) 203, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.