Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003454.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

112819 .. 113196

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggttcgagtctcaattcttgtgacatgtgtcatctctctaatgtttgtggtcttgacagaccatgctcaaggtttaggtgtcaactggggagcaatggcatcgcaccctatggatcccagcaatgtagtaaagatgctcaaggacaatgggatcaagaaagtaaagcttttcgacgcagagcctgccaccatgaaggccttgtccgggtcaggtatttcggtcattgttggaattcccaatgacaagttggcctcaatttcttcagcttacaaacatgcccaaaaatgggtgaaagaaaacatcaccaaatatgatcataatgggggcgttgatatcaggtttggattagtatctgcgaaccctgtttttttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

125

Amino Acids

13.48

Weight (kDa)

9.34

Isoelectric Point (pI)

14.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	26 - 106	5.9e-16	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	110, 123, 161
AcsI	RAATTY	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	3 cut(s)	207, 288, 289
AflIII	ACRYGT	1 cut(s)	26
AluBI	AGCT	2 cut(s)	169, 269
AluI	AGCT	2 cut(s)	169, 269
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	3 cut(s)	110, 123, 161
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	198, 252
ApoI	RAATTY	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	298, 304
BamHI	GGATCC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	110, 126
BmuI	ACTGGG	1 cut(s)	97
BoxI	GACNNNNGTC	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	54, 125
BpuMI	CCSGG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 288, 289
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	2 cut(s)	102, 130
Bse8I	GATNNNNATC	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	352
BseLI	CCNNNNNNNGG	3 cut(s)	207, 288, 289
BseMI	GCAATG	2 cut(s)	102, 130
BseNI	ACTGG	1 cut(s)	92
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	2 cut(s)	200, 254
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	3 cut(s)	207, 288, 289
BsmAI	GTCTC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	200, 254
Bsp143I	GATC	3 cut(s)	115, 153, 316
BspANI	GGCC	2 cut(s)	200, 254
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	3 cut(s)	110, 123, 161
BsrDI	GCAATG	2 cut(s)	102, 130
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	3 cut(s)	115, 153, 316
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	186
BstKTI	GATC	3 cut(s)	118, 156, 319
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	3 cut(s)	115, 153, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	2 cut(s)	30, 281
BstPAI	GACNNNNGTC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	200, 254
BtgZI	GCGATG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	185
CseI	GACGC	1 cut(s)	185
CviAII	CATG	4 cut(s)	27, 65, 193, 278
CviJI	RGCY	5 cut(s)	169, 184, 200, 254, 269
CviKI_1	RGCY	5 cut(s)	169, 184, 200, 254, 269
DpnI	GATC	3 cut(s)	117, 155, 318
DpnII	GATC	3 cut(s)	115, 153, 316
Eco147I	AGGCCT	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	337
FaeI	CATG	4 cut(s)	30, 68, 196, 281
FaiI	YATR	7 cut(s)	28, 66, 113, 194, 279, 315, 321
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	4 cut(s)	26, 64, 192, 277
FbaI	TGATCA	1 cut(s)	316
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	200, 254
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	4 cut(s)	30, 68, 196, 281
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	298, 304
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	55, 157
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
Hsp92II	CATG	4 cut(s)	30, 68, 196, 281
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	115, 153, 316
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	6 cut(s)	73, 133, 198, 198, 220, 325
LweI	GCATC	2 cut(s)	110, 126
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	3 cut(s)	117, 155, 318
MboI	GATC	3 cut(s)	115, 153, 316
MboII	GAAGA	1 cut(s)	255
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	3 cut(s)	15, 234, 258
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	1 cut(s)	265
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	3 cut(s)	115, 153, 316
NlaIII	CATG	4 cut(s)	30, 68, 196, 281
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	22
NspI	RCATGY	2 cut(s)	30, 281
PceI	AGGCCT	1 cut(s)	200
PciI	ACATGT	1 cut(s)	26
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PscI	ACATGT	1 cut(s)	26
PshAI	GACNNNNGTC	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	115
Sau3AI	GATC	3 cut(s)	115, 153, 316
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	6 cut(s)	76, 82, 171, 217, 271, 344
SfaNI	GCATC	2 cut(s)	110, 126
SmlI	CTYRAG	2 cut(s)	69, 140
SmoI	CTYRAG	2 cut(s)	69, 140
Sse9I	AATT	3 cut(s)	15, 234, 258
SseBI	AGGCCT	1 cut(s)	200
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	206
TaqI	TCGA	2 cut(s)	7, 174
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	3 cut(s)	15, 234, 258
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	209
XapI	RAATTY	1 cut(s)	234
XceI	RCATGY	2 cut(s)	30, 281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.