Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003456.1

Orthogroup ID

OG0031267

Physical Location & Seq

Genomic Coordinates Reverse (-)

1849 .. 2163

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgtctaccacaaagtcccgaactgctactaagaaagtggttattcatctgagagctactggtgatgcccctatactaaagcaagccaaattcaagatacctgtaatggacaagtttgctaaagtgactgactttaaccagccaacttatcaacctgatttcggtcatagacaggctaatggcaccaaaaagccaaaaacatgcaatggcccagatctttctcttccccagaatgatatctggagtttgtgctgtactctggagtcttcggctcatcttttgcattctttcttagctggtcttatacttccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04138 ko04140 ko04621 ko04622 map04068 map04136 map04138 map04140 map04621 map04622

Pfam Domains

Protein Families

APG12

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

9.63

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG12	PF04110	12 - 45	2.9e-06	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031267)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003456.1_g000002
rosa_samantha	Rh3DG327100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	2 cut(s)	56, 296
AluI	AGCT	2 cut(s)	56, 296
AoxI	GGCC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	258
BglII	AGATCT	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	2 cut(s)	262, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	30, 50, 292
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	8 cut(s)	56, 86, 142, 176, 193, 210, 272, 296
CviKI_1	RGCY	8 cut(s)	56, 86, 142, 176, 193, 210, 272, 296
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	3 cut(s)	30, 50, 292
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	238
FaeI	CATG	1 cut(s)	204
FaiI	YATR	4 cut(s)	74, 168, 202, 305
FatI	CATG	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	5
GsuI	CTGGAG	2 cut(s)	262, 281
HaeIII	GGCC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	204
HinfI	GANTC	1 cut(s)	263
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	4 cut(s)	18, 94, 241, 260
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4V	TGCA	2 cut(s)	204, 283
HpyF3I	CTNAG	3 cut(s)	30, 50, 292
Hsp92II	CATG	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	214
LweI	GCATC	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	215, 258
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	272
MseI	TTAA	2 cut(s)	135, 313
Mva1269I	GAATGC	1 cut(s)	283
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	204
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	204
PctI	GAATGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	135, 313
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	272
SetI	ASST	4 cut(s)	58, 103, 157, 298
SfaNI	GCATC	1 cut(s)	55
Sse9I	AATT	1 cut(s)	89
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	89
TatI	WGTACW	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	135, 313
Tru9I	TTAA	2 cut(s)	135, 313
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	35
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.