Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003475.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

59146 .. 59790

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atggttgatagcaacgcatcatctgcaacaactgaagacaccccaaaccccaaacctgatggaaatgcaccttctgagagtgaccttacgagtgattctgtagcccgaaaggttcaagaatctctctctcttggaaagaaacataagttttgggaaacacaacctgttggtcaattcaaggaccttggggacaacagtttacctgaaggcccaatcgaggacccaacaccattatctgaagtcaaacaggaaccttataagcttcccaatctctatgaatggataacatgtgatatggacagtgaagagatgtgtgctgaggtctataaccttcttacaaataactatgtcgaggatgatgagaacatgtttagatttaactattcgaaggagtttcttcgttgggctctacaccctccaggttattttaggagttggcatattggtgtccgcgtcataagttcaaagaagttagttgccttcattaccggtgttccttctagaattcgggtccgtaatgatgttgttaccatggcagagattaacttcctatgtgttcataagaagcttagatcaaagcgacttgctcctgttatgatctacattcatctggttgaaatctctttacaatccaaatgtacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004379 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009987 GO:0010016 GO:0010064 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018008 GO:0018193 GO:0018201 GO:0018377 GO:0019107 GO:0019538 GO:0031365 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048598 GO:0048731 GO:0048856 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

NMT NMT_C

Protein Analysis

214

Amino Acids

24.41

Weight (kDa)

5.6

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NMT	PF01233	71 - 200	4.6e-59	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccII	CGCG	1 cut(s)	453
AciI	CCGC	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	504
AcuI	CTGAAG	3 cut(s)	54, 225, 258
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflIII	ACRYGT	2 cut(s)	287, 366
AgeI	ACCGGT	1 cut(s)	488
AgsI	TTSAA	4 cut(s)	116, 178, 465, 617
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	2 cut(s)	262, 568
AluI	AGCT	2 cut(s)	262, 568
AoxI	GGCC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	504
AsiGI	ACCGGT	1 cut(s)	488
AspS9I	GGNCC	4 cut(s)	181, 209, 220, 511
AsuII	TTCGAA	1 cut(s)	386
AvaII	GGWCC	3 cut(s)	181, 220, 511
BanII	GRGCYC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	420
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	420
Bme18I	GGWCC	3 cut(s)	181, 220, 511
BmgT120I	GGNCC	4 cut(s)	181, 209, 220, 511
BmiI	GGNNCC	3 cut(s)	222, 252, 512
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	184, 531
BsaWI	WCCGGW	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	184, 531
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	66, 309
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	210
BshTI	ACCGGT	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	572, 597
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	1 cut(s)	451
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	67, 310
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	3 cut(s)	222, 252, 512
BspT104I	TTCGAA	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	488
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	2 cut(s)	184, 531
BssMI	GATC	2 cut(s)	572, 597
BssT1I	CCWWGG	2 cut(s)	184, 531
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	197, 302
Bst6I	CTCTTC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	386
BstDEI	CTNAG	3 cut(s)	75, 318, 569
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	2 cut(s)	575, 600
BstMBI	GATC	2 cut(s)	572, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	2 cut(s)	291, 370
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	307
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	4 cut(s)	181, 209, 220, 511
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	639
CspAI	ACCGGT	1 cut(s)	488
CviAII	CATG	3 cut(s)	288, 367, 532
CviJI	RGCY	5 cut(s)	104, 210, 262, 407, 568
CviKI_1	RGCY	5 cut(s)	104, 210, 262, 407, 568
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	3 cut(s)	75, 318, 569
DpnI	GATC	2 cut(s)	574, 599
DpnII	GATC	2 cut(s)	572, 597
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	184, 531
Eco24I	GRGCYC	1 cut(s)	409
Eco47I	GGWCC	3 cut(s)	181, 220, 511
Eco57I	CTGAAG	3 cut(s)	54, 225, 258
EcoO109I	RGGNCCY	2 cut(s)	181, 220
EcoRI	GAATTC	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	184, 531
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	2 cut(s)	184, 531
FaeI	CATG	3 cut(s)	291, 370, 535
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	3 cut(s)	287, 366, 531
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	409
FspBI	CTAG	1 cut(s)	501
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	489
HgaI	GACGC	1 cut(s)	442
Hin1II	CATG	3 cut(s)	291, 370, 535
HindIII	AAGCTT	2 cut(s)	260, 566
HinfI	GANTC	2 cut(s)	95, 119
HpaII	CCGG	1 cut(s)	489
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	76, 238
Hpy188III	TCNNGA	2 cut(s)	116, 501
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	6 cut(s)	81, 200, 341, 382, 490, 507
HpyCH4III	ACNGT	2 cut(s)	197, 302
HpyCH4V	TGCA	2 cut(s)	26, 68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	3 cut(s)	75, 318, 569
Hsp92II	CATG	3 cut(s)	291, 370, 535
Kzo9I	GATC	2 cut(s)	572, 597
LmnI	GCTCC	1 cut(s)	592
LpnPI	CCDG	9 cut(s)	69, 177, 216, 233, 405, 432, 502, 596, 603
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	80, 526
MalI	GATC	2 cut(s)	574, 599
MboI	GATC	2 cut(s)	572, 597
MboII	GAAGA	3 cut(s)	47, 317, 389
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	2 cut(s)	173, 504
MnlI	CCTC	4 cut(s)	211, 313, 346, 426
MseI	TTAA	2 cut(s)	378, 543
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	2 cut(s)	572, 597
NlaIII	CATG	3 cut(s)	291, 370, 535
NlaIV	GGNNCC	3 cut(s)	222, 252, 512
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	2 cut(s)	291, 370
NspV	TTCGAA	1 cut(s)	386
PciI	ACATGT	2 cut(s)	287, 366
PfeI	GAWTC	2 cut(s)	95, 119
PinAI	ACCGGT	1 cut(s)	488
PpuMI	RGGWCCY	2 cut(s)	181, 220
PscI	ACATGT	2 cut(s)	287, 366
PsiI	TTATAA	1 cut(s)	258
Psp5II	RGGWCCY	2 cut(s)	181, 220
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	222, 252, 512
PspPI	GGNCC	4 cut(s)	181, 209, 220, 511
PspPPI	RGGWCCY	2 cut(s)	181, 220
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	378, 543
Sau3AI	GATC	2 cut(s)	572, 597
Sau96I	GGNCC	4 cut(s)	181, 209, 220, 511
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	409
SfaNI	GCATC	1 cut(s)	26
SfcI	CTRYAG	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	3 cut(s)	181, 220, 511
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	2 cut(s)	173, 504
SsiI	CCGC	1 cut(s)	451
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	2 cut(s)	184, 531
TaaI	ACNGT	2 cut(s)	197, 302
TaqI	TCGA	3 cut(s)	216, 351, 386
TasI	AATT	2 cut(s)	173, 504
TfiI	GAWTC	2 cut(s)	95, 119
Tru1I	TTAA	2 cut(s)	378, 543
Tru9I	TTAA	2 cut(s)	378, 543
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	291, 472, 548, 596
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	181, 220, 511
XapI	RAATTY	1 cut(s)	504
XbaI	TCTAGA	1 cut(s)	500
XceI	RCATGY	2 cut(s)	291, 370
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.