Rmu_sc0003480.1_g000020

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003480.1
N/A
Physical Location & Seq
Reverse (-)
86710 .. 88870
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
atggcgcgaagcgtcgggttctctctgccggtgaccgtcgtcgttgtcgccatcggctacatctacttctccaccgtcttcattttcgtagaccggtggttcggtctgtggtcgtcgccggggttaatgaacgccgccattttcaccgccgtggccgccatgtgcgtctacaactactccatctccgtgttccgggatccgggtcgggtcccctccacgtacatgcccgatgtcgaggattccgaaaaccctatccacgagatcaagcgcaagcatagtgacattccttggatgagactccatcagtcattttccattgcttgtgtagctgccattaggccagcaatcaacctctttctgttcctcggccaaaaaaaaaaacgacaccctccaccaccgggagacgccgtcgttttggcgccggtgcctccgcctccgacgaaatttccctcctttctcacaaaaatggcgcgaagcgtcgggttctctctgccggtgaccgtcgtcgttgtcgccatcggctacatctacttctccaccgtcttcattttcgtagaccggtggttcggtctgtggtcgtcgccggggttaatgaacgccgccattttcaccgccgtggccgccatgtgcgtctacaactactccatctccgtgttccgggatccgggtcgggtcccctccacgtacatgcccgatgtcgaggattccgtgccaaggaatatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

241

Amino Acids

26.8

Weight (kDa)

9.32

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 418, 424
AccI GTMKAC 4 cut(s) 90, 168, 555, 633
AccII CGCG 2 cut(s) 7, 472
AciI CCGC 7 cut(s) 135, 147, 156, 431, 600, 612, 621
AclWI GGATC 4 cut(s) 191, 204, 656, 669
AcoI YGGCCR 3 cut(s) 153, 367, 618
AcsI RAATTY 1 cut(s) 443
AcyI GRCGYC 2 cut(s) 405, 419
AfaI GTAC 2 cut(s) 221, 686
AfiI CCNNNNNNNGG 6 cut(s) 192, 199, 398, 657, 664, 714
AgeI ACCGGT 2 cut(s) 93, 558
AleI CACNNNNGTG 2 cut(s) 149, 614
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
Alw26I GTCTC 2 cut(s) 289, 396
AlwI GGATC 4 cut(s) 191, 204, 656, 669
AoxI GGCC 4 cut(s) 153, 338, 367, 618
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 443
ArsI GACNNNNNNTTYG 4 cut(s) 83, 115, 548, 580
AsiGI ACCGGT 2 cut(s) 93, 558
AspLEI GCGC 4 cut(s) 7, 270, 421, 472
AspS9I GGNCC 2 cut(s) 208, 673
AsuC2I CCSGG 7 cut(s) 120, 194, 201, 399, 585, 659, 666
AsuHPI GGTGA 4 cut(s) 43, 136, 508, 601
AvaII GGWCC 2 cut(s) 208, 673
BamHI GGATCC 2 cut(s) 196, 661
BanI GGYRCC 2 cut(s) 418, 424
BauI CACGAG 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 70, 535
BbvI GCAGC 1 cut(s) 316
BccI CCATC 5 cut(s) 59, 188, 309, 524, 653
BceAI ACGGC 3 cut(s) 134, 392, 599
BcnI CCSGG 7 cut(s) 120, 194, 201, 399, 585, 659, 666
BcoDI GTCTC 2 cut(s) 289, 396
BfoI RGCGCY 1 cut(s) 422
BisI GCNGC 5 cut(s) 135, 156, 330, 600, 621
BlsI GCNGC 5 cut(s) 136, 157, 331, 601, 622
Bme1390I CCNGG 7 cut(s) 120, 194, 201, 399, 585, 659, 666
Bme18I GGWCC 2 cut(s) 208, 673
BmgT120I GGNCC 2 cut(s) 208, 673
BmiI GGNNCC 8 cut(s) 198, 209, 210, 420, 426, 663, 674, 675
BmrFI CCNGG 7 cut(s) 120, 194, 201, 399, 585, 659, 666
BoxI GACNNNNGTC 2 cut(s) 38, 503
BpiI GAAGAC 2 cut(s) 70, 535
BpuMI CCSGG 7 cut(s) 120, 194, 201, 399, 585, 659, 666
BsaAI YACGTR 2 cut(s) 219, 684
BsaHI GRCGYC 2 cut(s) 405, 419
BsaJI CCNNGG 7 cut(s) 119, 150, 287, 364, 584, 615, 713
BsaWI WCCGGW 2 cut(s) 93, 558
Bsc4I CCNNNNNNNGG 6 cut(s) 192, 199, 398, 657, 664, 714
Bse118I RCCGGY 5 cut(s) 28, 93, 421, 493, 558
Bse3DI GCAATG 1 cut(s) 315
BseDI CCNNGG 7 cut(s) 119, 150, 287, 364, 584, 615, 713
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 6 cut(s) 192, 199, 398, 657, 664, 714
BseMI GCAATG 1 cut(s) 315
BseXI GCAGC 1 cut(s) 316
Bsh1236I CGCG 2 cut(s) 7, 472
BshFI GGCC 4 cut(s) 155, 340, 369, 620
BshNI GGYRCC 2 cut(s) 418, 424
BshTI ACCGGT 2 cut(s) 93, 558
BslFI GGGAC 2 cut(s) 194, 659
BslI CCNNNNNNNGG 6 cut(s) 192, 199, 398, 657, 664, 714
BsmAI GTCTC 2 cut(s) 289, 396
BsmBI CGTCTC 1 cut(s) 396
BsmFI GGGAC 2 cut(s) 194, 659
BsnI GGCC 4 cut(s) 155, 340, 369, 620
Bsp143I GATC 3 cut(s) 196, 261, 661
BspACI CCGC 7 cut(s) 135, 147, 156, 431, 600, 612, 621
BspANI GGCC 4 cut(s) 155, 340, 369, 620
BspFNI CGCG 2 cut(s) 7, 472
BspLI GGNNCC 8 cut(s) 198, 209, 210, 420, 426, 663, 674, 675
BspPI GGATC 4 cut(s) 191, 204, 656, 669
BspT107I GGYRCC 2 cut(s) 418, 424
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 5 cut(s) 28, 93, 421, 493, 558
BssAI RCCGGY 5 cut(s) 28, 93, 421, 493, 558
BssECI CCNNGG 7 cut(s) 119, 150, 287, 364, 584, 615, 713
BssMI GATC 3 cut(s) 196, 261, 661
BssNI GRCGYC 2 cut(s) 405, 419
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 287, 713
Bst2BI CACGAG 1 cut(s) 257
Bst4CI ACNGT 4 cut(s) 37, 76, 502, 541
BstACI GRCGYC 2 cut(s) 405, 419
BstBAI YACGTR 2 cut(s) 219, 684
BstC8I GCNNGC 2 cut(s) 272, 342
BstDSI CCRYGG 2 cut(s) 150, 615
BstEII GGTNACC 2 cut(s) 31, 496
BstF5I GGATG 1 cut(s) 297
BstFNI CGCG 2 cut(s) 7, 472
BstH2I RGCGCY 1 cut(s) 422
BstHHI GCGC 4 cut(s) 7, 270, 421, 472
BstKTI GATC 3 cut(s) 199, 264, 664
BstMAI GTCTC 2 cut(s) 289, 396
BstMBI GATC 3 cut(s) 196, 261, 661
BstMWI GCNNNNNNNGC 3 cut(s) 155, 326, 620
BstNSI RCATGY 2 cut(s) 226, 691
BstPAI GACNNNNGTC 2 cut(s) 38, 503
BstPI GGTNACC 2 cut(s) 31, 496
BstSCI CCNGG 7 cut(s) 118, 192, 199, 397, 583, 657, 664
BstUI CGCG 2 cut(s) 7, 472
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 2 cut(s) 70, 535
BstX2I RGATCY 2 cut(s) 196, 661
BstYI RGATCY 2 cut(s) 196, 661
BsuRI GGCC 4 cut(s) 155, 340, 369, 620
BtgI CCRYGG 2 cut(s) 150, 615
BtsCI GGATG 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 272, 342
CfoI GCGC 4 cut(s) 7, 270, 421, 472
Cfr10I RCCGGY 5 cut(s) 28, 93, 421, 493, 558
Cfr13I GGNCC 2 cut(s) 208, 673
CseI GACGC 4 cut(s) 154, 413, 466, 619
Csp6I GTAC 2 cut(s) 220, 685
CspAI ACCGGT 2 cut(s) 93, 558
CviAII CATG 4 cut(s) 160, 223, 625, 688
CviJI RGCY 7 cut(s) 57, 155, 329, 340, 369, 522, 620
CviKI_1 RGCY 7 cut(s) 57, 155, 329, 340, 369, 522, 620
CviQI GTAC 2 cut(s) 220, 685
DinI GGCGCC 1 cut(s) 420
DpnI GATC 3 cut(s) 198, 263, 663
DpnII GATC 3 cut(s) 196, 261, 661
EaeI YGGCCR 3 cut(s) 153, 367, 618
EciI GGCGGA 1 cut(s) 420
Eco130I CCWWGG 2 cut(s) 287, 713
Eco47I GGWCC 2 cut(s) 208, 673
Eco91I GGTNACC 2 cut(s) 31, 496
EcoO109I RGGNCCY 2 cut(s) 208, 673
EcoO65I GGTNACC 2 cut(s) 31, 496
EcoT14I CCWWGG 2 cut(s) 287, 713
EgeI GGCGCC 1 cut(s) 420
EheI GGCGCC 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 287, 713
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 4 cut(s) 163, 226, 628, 691
FaiI YATR 6 cut(s) 161, 224, 276, 626, 689, 722
FaqI GGGAC 2 cut(s) 194, 659
FatI CATG 4 cut(s) 159, 222, 624, 687
FblI GTMKAC 4 cut(s) 90, 168, 555, 633
Fnu4HI GCNGC 5 cut(s) 135, 156, 330, 600, 621
FokI GGATG 1 cut(s) 304
Fsp4HI GCNGC 5 cut(s) 135, 156, 330, 600, 621
GlaI GCGC 4 cut(s) 6, 269, 420, 471
GluI GCNGC 5 cut(s) 135, 156, 330, 600, 621
HaeII RGCGCY 1 cut(s) 422
HaeIII GGCC 4 cut(s) 155, 340, 369, 620
HgaI GACGC 4 cut(s) 154, 413, 466, 619
HhaI GCGC 4 cut(s) 7, 270, 421, 472
Hin1I GRCGYC 2 cut(s) 405, 419
Hin1II CATG 4 cut(s) 163, 226, 628, 691
Hin6I GCGC 4 cut(s) 5, 268, 419, 470
HinP1I GCGC 4 cut(s) 5, 268, 419, 470
HinfI GANTC 3 cut(s) 239, 297, 704
HphI GGTGA 4 cut(s) 43, 136, 508, 601
Hpy166II GTNNAC 4 cut(s) 91, 169, 556, 634
Hpy188I TCNGA 2 cut(s) 244, 438
Hpy8I GTNNAC 4 cut(s) 91, 169, 556, 634
HpyCH4III ACNGT 4 cut(s) 37, 76, 502, 541
HpyCH4IV ACGT 2 cut(s) 218, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 326, 620
HpySE526I ACGT 2 cut(s) 218, 683
Hsp92I GRCGYC 2 cut(s) 405, 419
Hsp92II CATG 4 cut(s) 163, 226, 628, 691
HspAI GCGC 4 cut(s) 5, 268, 419, 470
KasI GGCGCC 1 cut(s) 418
KflI GGGWCCC 2 cut(s) 208, 673
Kzo9I GATC 3 cut(s) 196, 261, 661
Lsp1109I GCAGC 1 cut(s) 316
MaeII ACGT 2 cut(s) 218, 683
MaeIII GTNAC 3 cut(s) 31, 278, 496
MalI GATC 3 cut(s) 198, 263, 663
MboI GATC 3 cut(s) 196, 261, 661
MboII GAAGA 2 cut(s) 70, 535
MflI RGATCY 2 cut(s) 196, 661
MluCI AATT 1 cut(s) 443
Mly113I GGCGCC 1 cut(s) 419
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 461
MseI TTAA 2 cut(s) 125, 590
MslI CAYNNNNRTG 7 cut(s) 149, 185, 221, 464, 614, 650, 686
MspR9I CCNGG 7 cut(s) 120, 194, 201, 399, 585, 659, 666
MvnI CGCG 2 cut(s) 7, 472
MwoI GCNNNNNNNGC 3 cut(s) 155, 326, 620
NarI GGCGCC 1 cut(s) 419
NciI CCSGG 7 cut(s) 120, 194, 201, 399, 585, 659, 666
NdeII GATC 3 cut(s) 196, 261, 661
NlaIII CATG 4 cut(s) 163, 226, 628, 691
NlaIV GGNNCC 8 cut(s) 198, 209, 210, 420, 426, 663, 674, 675
NmeAIII GCCGAG 1 cut(s) 345
NmuCI GTSAC 3 cut(s) 31, 278, 496
NspI RCATGY 2 cut(s) 226, 691
OliI CACNNNNGTG 2 cut(s) 149, 614
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 705
PfeI GAWTC 2 cut(s) 239, 704
PflFI GACNNNGTC 1 cut(s) 407
PfoI TCCNGGA 2 cut(s) 192, 657
PinAI ACCGGT 2 cut(s) 93, 558
PkrI GCNGC 5 cut(s) 136, 157, 331, 601, 622
PleI GAGTC 1 cut(s) 291
PluTI GGCGCC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 291
Ppu21I YACGTR 2 cut(s) 219, 684
PpuMI RGGWCCY 2 cut(s) 208, 673
PshAI GACNNNNGTC 2 cut(s) 38, 503
Psp5II RGGWCCY 2 cut(s) 208, 673
PspEI GGTNACC 2 cut(s) 31, 496
PspN4I GGNNCC 8 cut(s) 198, 209, 210, 420, 426, 663, 674, 675
PspPI GGNCC 2 cut(s) 208, 673
PspPPI RGGWCCY 2 cut(s) 208, 673
PsuI RGATCY 2 cut(s) 196, 661
PsyI GACNNNGTC 1 cut(s) 407
RsaI GTAC 2 cut(s) 221, 686
RsaNI GTAC 2 cut(s) 220, 685
RseI CAYNNNNRTG 7 cut(s) 149, 185, 221, 464, 614, 650, 686
SaqAI TTAA 2 cut(s) 125, 590
SatI GCNGC 5 cut(s) 135, 156, 330, 600, 621
Sau3AI GATC 3 cut(s) 196, 261, 661
Sau96I GGNCC 2 cut(s) 208, 673
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 7 cut(s) 120, 194, 201, 399, 585, 659, 666
SetI ASST 4 cut(s) 221, 331, 354, 686
SfoI GGCGCC 1 cut(s) 420
SgrAI CRCCGGYG 1 cut(s) 421
SinI GGWCC 2 cut(s) 208, 673
SmiMI CAYNNNNRTG 7 cut(s) 149, 185, 221, 464, 614, 650, 686
Sse9I AATT 1 cut(s) 443
SsiI CCGC 7 cut(s) 135, 147, 156, 431, 600, 612, 621
SspDI GGCGCC 1 cut(s) 418
StyD4I CCNGG 7 cut(s) 118, 192, 199, 397, 583, 657, 664
StyI CCWWGG 2 cut(s) 287, 713
TaaI ACNGT 4 cut(s) 37, 76, 502, 541
TaiI ACGT 2 cut(s) 221, 686
TaqI TCGA 2 cut(s) 234, 699
TaqII GACCGA 2 cut(s) 92, 557
TasI AATT 1 cut(s) 443
TauI GCSGC 4 cut(s) 137, 158, 602, 623
TfiI GAWTC 2 cut(s) 239, 704
Tru1I TTAA 2 cut(s) 125, 590
Tru9I TTAA 2 cut(s) 125, 590
TseFI GTSAC 3 cut(s) 31, 278, 496
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 3 cut(s) 31, 278, 496
TspDTI ATGAA 4 cut(s) 70, 143, 535, 608
TspGWI ACGGA 3 cut(s) 175, 640, 697
Tth111I GACNNNGTC 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 208, 673
XapI RAATTY 1 cut(s) 443
XceI RCATGY 2 cut(s) 226, 691
XmiI GTMKAC 4 cut(s) 90, 168, 555, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.