Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003481.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

48478 .. 52210

Gene Structure 3733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgtgcaataagcttggattcgagagattcgagattaatcgtttaagctacgaaacggcgcacgttagccacgtttgggtccgttgggagggaaggggctgttcgcttcttcctttctcctccatcaatcatcttcttcttcttcttcttcttcacgtagaacgatctctctttctctttctcgatctctgcatcagggtttcgcagatggcgtcgaagcggatcctgaaggagcttaaggatttgcagaaggatcctcctacgtcatgcagcgcaggtcctgttgctgaagacatgtttcattggcaagcaacaattatgggtcccccagatagtccttatgctggtggtgtttttctagttactattcattttccgccagattatccatttaagccaccaaaggtggcatttagaacaaaggtattccacccaaacattaacagcaatgggagcatttgcctcgacatcttgaaggagcaatggagtcctgctctaaccatttccaaggtgttgctttcaatctgttcactgttgacggatccaaatcccgatgatccattggtgccagagattgctcacatgtacaagacagacaggaacaagtatgagacaacagcaagaagctggacccaaaaatatgccatgggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

217

Amino Acids

24.71

Weight (kDa)

8.2

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	74 - 210	1.3e-54	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	565
AciI	CCGC	2 cut(s)	220, 377
AclWI	GGATC	7 cut(s)	217, 230, 248, 261, 536, 549, 551
AcuI	CTGAAG	2 cut(s)	248, 309
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	3 cut(s)	76, 88, 344
AflII	CTTAAG	1 cut(s)	236
AflIII	ACRYGT	2 cut(s)	294, 582
AgsI	TTSAA	2 cut(s)	475, 522
AluBI	AGCT	4 cut(s)	13, 48, 235, 627
AluI	AGCT	4 cut(s)	13, 48, 235, 627
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	7 cut(s)	217, 230, 248, 261, 536, 549, 551
AlwNI	CAGNNNCTG	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	270
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	61, 275
AspS9I	GGNCC	4 cut(s)	79, 278, 323, 630
AvaII	GGWCC	4 cut(s)	79, 278, 323, 630
BamHI	GGATCC	3 cut(s)	222, 253, 541
BanI	GGYRCC	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	2 cut(s)	131, 202
BceAI	ACGGC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	1 cut(s)	359
BfrI	CTTAAG	1 cut(s)	236
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme18I	GGWCC	4 cut(s)	79, 278, 323, 630
BmgT120I	GGNCC	4 cut(s)	79, 278, 323, 630
BmiI	GGNNCC	8 cut(s)	80, 224, 255, 324, 325, 543, 567, 632
BmsI	GCATC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	297
BplI	GAGNNNNNCTC	2 cut(s)	478, 510
BsaAI	YACGTR	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	507, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 88, 344
Bse3DI	GCAATG	2 cut(s)	454, 488
Bse8I	GATNNNNATC	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	507, 645
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	3 cut(s)	76, 88, 344
BseMI	GCAATG	2 cut(s)	454, 488
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	565
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	3 cut(s)	76, 88, 344
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	309
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	6 cut(s)	164, 184, 222, 253, 541, 556
Bsp19I	CCATGG	1 cut(s)	645
BspACI	CCGC	2 cut(s)	220, 377
BspLI	GGNNCC	8 cut(s)	80, 224, 255, 324, 325, 543, 567, 632
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	7 cut(s)	217, 230, 248, 261, 536, 549, 551
BspT107I	GGYRCC	1 cut(s)	565
BspTI	CTTAAG	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	454, 488
BsrGI	TGTACA	1 cut(s)	585
BssECI	CCNNGG	2 cut(s)	507, 645
BssMI	GATC	6 cut(s)	164, 184, 222, 253, 541, 556
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	2 cut(s)	507, 645
Bst4CI	ACNGT	1 cut(s)	534
BstACI	GRCGYC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	236
BstAUI	TGTACA	1 cut(s)	585
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	645
BstHHI	GCGC	2 cut(s)	61, 275
BstKTI	GATC	6 cut(s)	167, 187, 225, 256, 544, 559
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	6 cut(s)	164, 184, 222, 253, 541, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	453
BstNSI	RCATGY	2 cut(s)	298, 586
BstV1I	GCAGC	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	3 cut(s)	222, 253, 541
BstYI	RGATCY	3 cut(s)	222, 253, 541
BtgI	CCRYGG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	530
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	309
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	2 cut(s)	61, 275
Cfr13I	GGNCC	4 cut(s)	79, 278, 323, 630
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	4 cut(s)	267, 295, 583, 646
CviJI	RGCY	8 cut(s)	13, 48, 69, 99, 235, 397, 627, 651
CviKI_1	RGCY	8 cut(s)	13, 48, 69, 99, 235, 397, 627, 651
CviQI	GTAC	1 cut(s)	586
DpnI	GATC	6 cut(s)	166, 186, 224, 255, 543, 558
DpnII	GATC	6 cut(s)	164, 184, 222, 253, 541, 556
EciI	GGCGGA	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	507, 645
Eco47I	GGWCC	4 cut(s)	79, 278, 323, 630
Eco57I	CTGAAG	2 cut(s)	248, 309
EcoO109I	RGGNCCY	2 cut(s)	278, 323
EcoT14I	CCWWGG	2 cut(s)	507, 645
ErhI	CCWWGG	2 cut(s)	507, 645
FaeI	CATG	4 cut(s)	270, 298, 586, 649
FaiI	YATR	8 cut(s)	268, 296, 320, 342, 584, 609, 642, 647
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	4 cut(s)	266, 294, 582, 645
Fnu4HI	GCNGC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	2 cut(s)	60, 274
GluI	GCNGC	1 cut(s)	271
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	2 cut(s)	61, 275
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	270, 298, 586, 649
Hin6I	GCGC	2 cut(s)	59, 273
HinP1I	GCGC	2 cut(s)	59, 273
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	3 cut(s)	18, 27, 487
Hpy166II	GTNNAC	2 cut(s)	530, 537
Hpy188III	TCNNGA	6 cut(s)	22, 31, 182, 226, 472, 551
Hpy8I	GTNNAC	2 cut(s)	530, 537
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	4 cut(s)	87, 223, 244, 469
HpyCH4III	ACNGT	1 cut(s)	534
HpyCH4IV	ACGT	4 cut(s)	63, 72, 156, 263
HpyCH4V	TGCA	4 cut(s)	6, 192, 247, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	453
HpySE526I	ACGT	4 cut(s)	63, 72, 156, 263
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	4 cut(s)	270, 298, 586, 649
HspAI	GCGC	2 cut(s)	59, 273
KflI	GGGWCCC	1 cut(s)	323
Kzo9I	GATC	6 cut(s)	164, 184, 222, 253, 541, 556
LmnI	GCTCC	3 cut(s)	232, 453, 478
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	4 cut(s)	63, 72, 156, 263
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	6 cut(s)	166, 186, 224, 255, 543, 558
MboI	GATC	6 cut(s)	164, 184, 222, 253, 541, 556
MboII	GAAGA	9 cut(s)	101, 125, 128, 131, 134, 137, 140, 143, 302
MflI	RGATCY	3 cut(s)	222, 253, 541
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	4 cut(s)	82, 130, 267, 473
MseI	TTAA	5 cut(s)	36, 44, 237, 393, 441
MspCI	CTTAAG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	645
NdeII	GATC	6 cut(s)	164, 184, 222, 253, 541, 556
NlaIII	CATG	4 cut(s)	270, 298, 586, 649
NlaIV	GGNNCC	8 cut(s)	80, 224, 255, 324, 325, 543, 567, 632
NspI	RCATGY	2 cut(s)	298, 586
PciI	ACATGT	2 cut(s)	294, 582
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 69, 209
PfeI	GAWTC	2 cut(s)	18, 27
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Ppu21I	YACGTR	1 cut(s)	157
PpuMI	RGGWCCY	2 cut(s)	278, 323
PscI	ACATGT	2 cut(s)	294, 582
PshBI	ATTAAT	1 cut(s)	36
Psp5II	RGGWCCY	2 cut(s)	278, 323
PspN4I	GGNNCC	8 cut(s)	80, 224, 255, 324, 325, 543, 567, 632
PspPI	GGNCC	4 cut(s)	79, 278, 323, 630
PspPPI	RGGWCCY	2 cut(s)	278, 323
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	3 cut(s)	222, 253, 541
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SaqAI	TTAA	5 cut(s)	36, 44, 237, 393, 441
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	6 cut(s)	164, 184, 222, 253, 541, 556
Sau96I	GGNCC	4 cut(s)	79, 278, 323, 630
SchI	GAGTC	1 cut(s)	496
SfaNI	GCATC	1 cut(s)	201
SinI	GGWCC	4 cut(s)	79, 278, 323, 630
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	220, 377
SspMI	CTAG	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	507, 645
TaaI	ACNGT	1 cut(s)	534
TaiI	ACGT	4 cut(s)	66, 75, 159, 266
TaqI	TCGA	5 cut(s)	21, 30, 183, 215, 465
TasI	AATT	1 cut(s)	315
TatI	WGTACW	1 cut(s)	585
TfiI	GAWTC	2 cut(s)	18, 27
Tru1I	TTAA	5 cut(s)	36, 44, 237, 393, 441
Tru9I	TTAA	5 cut(s)	36, 44, 237, 393, 441
TscAI	CASTG	1 cut(s)	537
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	2 cut(s)	290, 359
TspGWI	ACGGA	2 cut(s)	71, 554
TspRI	CASTG	1 cut(s)	537
Vha464I	CTTAAG	1 cut(s)	236
VpaK11BI	GGWCC	4 cut(s)	79, 278, 323, 630
VspI	ATTAAT	1 cut(s)	36
XceI	RCATGY	2 cut(s)	298, 586
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.