Rmu_sc0003490.1_g000024

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003490.1
N/A
Physical Location & Seq
Reverse (-)
76763 .. 78311
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
atgcaggaagtggaaagtatggtaccttccgaaagtcatgattggcgagattatgtaaataatttgacagcgcgtgaacaatttaccataaatcacaagaacttgatgaaggatgcagaaatgtcaatgaaagggatggcaacttcttgtacagttgttggtgctctcgttgtcaccatcatgtttgctgtagcattcacaattcctggtggaaataacggtgacacaggcattccagtgttcatagataaaaagttgttcatgctgccagctcagcccagaagcaacgtggctgacgcaagtagagagagacgcggaggagaggctgcgttgtgggcacgcacgaatcatggagcaccgcattttctgaccgcgtggaaagcatgcgtttgtcgcctagcgacaagaagtgggacgcatcaacttgacgcgtggaatgtagccgttggatatcaccaaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 DUF4219 PGG

Protein Analysis

154

Amino Acids

16.99

Weight (kDa)

7.8

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 43 - 87 5.1e-08 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 22
AccII CGCG 4 cut(s) 73, 315, 374, 431
AciI CCGC 3 cut(s) 315, 359, 372
AcsI RAATTY 1 cut(s) 459
AfaI GTAC 2 cut(s) 24, 151
AflIII ACRYGT 1 cut(s) 429
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw21I GWGCWC 2 cut(s) 166, 358
Alw26I GTCTC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 265, 326
ApoI RAATTY 1 cut(s) 459
Asp718I GGTACC 1 cut(s) 22
AspLEI GCGC 1 cut(s) 73
AsuHPI GGTGA 3 cut(s) 166, 233, 446
BaeGI GKGCMC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 22
BarI GAAGNNNNNNTAC 2 cut(s) 10, 42
Bbv12I GWGCWC 2 cut(s) 166, 358
BbvI GCAGC 2 cut(s) 252, 313
BccI CCATC 2 cut(s) 130, 185
BceAI ACGGC 1 cut(s) 428
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 2 cut(s) 266, 327
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 2 cut(s) 267, 328
Bme1390I CCNGG 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 2 cut(s) 103, 427
Bpu1102I GCTNAGC 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 118, 141
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 333
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 2 cut(s) 252, 313
Bsh1236I CGCG 4 cut(s) 73, 315, 374, 431
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 2 cut(s) 166, 358
BslFI GGGAC 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 427
BsmI GAATGC 2 cut(s) 194, 231
Bsp1286I GDGCHC 3 cut(s) 166, 340, 358
Bsp1407I TGTACA 1 cut(s) 149
Bsp1720I GCTNAGC 1 cut(s) 273
BspACI CCGC 3 cut(s) 315, 359, 372
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 4 cut(s) 73, 315, 374, 431
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 154, 221
BstAUI TGTACA 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 270, 340, 385
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 118, 141
BstFNI CGCG 4 cut(s) 73, 315, 374, 431
BstHHI GCGC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 4 cut(s) 274, 335, 380, 393
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 340
BstUI CGCG 4 cut(s) 73, 315, 374, 431
BstV1I GCAGC 2 cut(s) 252, 313
BtsCI GGATG 2 cut(s) 118, 141
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 3 cut(s) 270, 340, 385
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 73
CseI GACGC 4 cut(s) 305, 321, 424, 437
Csp6I GTAC 2 cut(s) 23, 150
CviAII CATG 5 cut(s) 38, 181, 262, 350, 384
CviJI RGCY 5 cut(s) 272, 277, 293, 326, 443
CviKI_1 RGCY 5 cut(s) 272, 277, 293, 326, 443
CviQI GTAC 2 cut(s) 23, 150
DdeI CTNAG 1 cut(s) 273
Eco32I GATATC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 205
EcoRV GATATC 1 cut(s) 452
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 5 cut(s) 41, 184, 265, 353, 387
FaiI YATR 9 cut(s) 20, 39, 54, 89, 182, 245, 263, 351, 385
FaqI GGGAC 1 cut(s) 427
FatI CATG 5 cut(s) 37, 180, 261, 349, 383
Fnu4HI GCNGC 2 cut(s) 266, 327
FokI GGATG 2 cut(s) 125, 148
Fsp4HI GCNGC 2 cut(s) 266, 327
FspBI CTAG 1 cut(s) 398
GlaI GCGC 1 cut(s) 72
GluI GCNGC 2 cut(s) 266, 327
HgaI GACGC 4 cut(s) 305, 321, 424, 437
HhaI GCGC 1 cut(s) 73
Hin1II CATG 5 cut(s) 41, 184, 265, 353, 387
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 346
HphI GGTGA 3 cut(s) 166, 233, 446
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 2 cut(s) 31, 369
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 36, 103
HpyCH4III ACNGT 2 cut(s) 154, 221
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 2 cut(s) 4, 116
HpyF10VI GCNNNNNNNGC 4 cut(s) 274, 335, 380, 393
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 5 cut(s) 41, 184, 265, 353, 387
HspAI GCGC 1 cut(s) 71
KpnI GGTACC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 6 cut(s) 192, 213, 219, 249, 282, 292
Lsp1109I GCAGC 2 cut(s) 252, 313
LweI GCATC 2 cut(s) 103, 427
MaeI CTAG 1 cut(s) 398
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 172, 221
MhlI GDGCHC 3 cut(s) 166, 340, 358
MluCI AATT 4 cut(s) 61, 80, 201, 459
MluI ACGCGT 1 cut(s) 429
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 2 cut(s) 311, 316
MslI CAYNNNNRTG 2 cut(s) 179, 236
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 2 cut(s) 194, 231
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 4 cut(s) 73, 315, 374, 431
MwoI GCNNNNNNNGC 4 cut(s) 274, 335, 380, 393
NlaIII CATG 5 cut(s) 41, 184, 265, 353, 387
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 2 cut(s) 172, 221
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PagI TCATGA 1 cut(s) 37
PctI GAATGC 2 cut(s) 194, 231
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 267, 328
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 24
RsaI GTAC 2 cut(s) 24, 151
RsaNI GTAC 2 cut(s) 23, 150
RseI CAYNNNNRTG 2 cut(s) 179, 236
SatI GCNGC 2 cut(s) 266, 327
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 3 cut(s) 166, 340, 358
SetI ASST 3 cut(s) 28, 274, 291
SfaNI GCATC 2 cut(s) 103, 427
SfcI CTRYAG 1 cut(s) 189
SmiMI CAYNNNNRTG 2 cut(s) 179, 236
SphI GCATGC 1 cut(s) 387
Sse9I AATT 4 cut(s) 61, 80, 201, 459
SsiI CCGC 3 cut(s) 315, 359, 372
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 154, 221
TaiI ACGT 1 cut(s) 291
TasI AATT 4 cut(s) 61, 80, 201, 459
TatI WGTACW 1 cut(s) 149
TfiI GAWTC 1 cut(s) 346
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 2 cut(s) 172, 221
TseI GCWGC 2 cut(s) 265, 326
Tsp45I GTSAC 2 cut(s) 172, 221
TspDTI ATGAA 4 cut(s) 122, 143, 232, 250
TspRI CASTG 1 cut(s) 243
XapI RAATTY 1 cut(s) 459
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.