Rmu_sc0003499.1_g000008
ERF Family

Mitochondrial transcription termination factor family protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003499.1
N/A
Physical Location & Seq
Forward (+)
25217 .. 26254
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 774 bp
atgaatgaggtcaaggggatgagatttgatttgaagaagtcgacttttgttgttgcactgagagcattgtgtgggaagagcagttgggccatatggaatagaaatcgcgagatttacaagagagttggggttgtttggagaataggatcatcccgagatgttcggttgtcaaagtttgatgaagaaaggattgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagtcattcataataaagtatatagattttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

257

Amino Acids

32.46

Weight (kDa)

4.05

Isoelectric Point (pI)

249.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 41
AccII CGCG 1 cut(s) 108
AclWI GGATC 1 cut(s) 154
AgsI TTSAA 2 cut(s) 34, 194
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 744
AspS9I GGNCC 1 cut(s) 87
AvaI CYCGRG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 87
BseGI GGATG 2 cut(s) 24, 149
BseMII CTCAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 153
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 153
Bsp143I GATC 1 cut(s) 146
Bsp68I TCGCGA 1 cut(s) 108
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 770
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 71
BssMI GATC 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 24, 149
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 1 cut(s) 149
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstUI CGCG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 24, 149
BtsIMutI CAGTG 1 cut(s) 56
BtuMI TCGCGA 1 cut(s) 108
CciI TCATGA 1 cut(s) 770
Cfr13I GGNCC 1 cut(s) 87
CviAII CATG 1 cut(s) 771
CviJI RGCY 1 cut(s) 89
CviKI_1 RGCY 1 cut(s) 89
DdeI CTNAG 1 cut(s) 59
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 153
FaeI CATG 1 cut(s) 774
FaiI YATR 6 cut(s) 92, 94, 750, 760, 762, 772
FatI CATG 1 cut(s) 770
FauNDI CATATG 1 cut(s) 92
FblI GTMKAC 1 cut(s) 41
FokI GGATG 2 cut(s) 31, 136
HaeIII GGCC 1 cut(s) 89
Hin1II CATG 1 cut(s) 774
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 42
Hpy188III TCNNGA 3 cut(s) 107, 153, 771
Hpy8I GTNNAC 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 1 cut(s) 774
Kzo9I GATC 1 cut(s) 146
LguI GCTCTTC 1 cut(s) 71
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 744
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeI CATATG 1 cut(s) 92
NdeII GATC 1 cut(s) 146
NlaIII CATG 1 cut(s) 774
NruI TCGCGA 1 cut(s) 108
PagI TCATGA 1 cut(s) 770
PciSI GCTCTTC 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 744
PspPI GGNCC 1 cut(s) 87
RruI TCGCGA 1 cut(s) 108
SalI GTCGAC 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 1 cut(s) 87
SetI ASST 1 cut(s) 12
SgeI CNNG 6 cut(s) 25, 119, 121, 130, 165, 167
TaqI TCGA 1 cut(s) 41
TscAI CASTG 1 cut(s) 63
TspDTI ATGAA 4 cut(s) 17, 195, 737, 759
TspRI CASTG 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.