Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003499.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

128083 .. 129966

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggaatcggccgatgttgctacaagttgcattgatgttgatcttgctgaaaaggttatcaagggaattgtcgatggttgccaaaaatctgactgtactcttttagagggtgagtatgacctcagtggttttgcggttggaattgtgaacaaggaatcagtgattgatgggaaaaacattttggctggagatgtcctcattgacctaccatccagtggggttggaagagtagaagatgctgaaatgagactaacttttaatatgggtattgggatggttcttgttgtgagtgaggaggcatcccacaaaatacttgaagatggaaatggagcttactgcattgaataccgccacaaggtgtctgcttccgataacgtggacgagggtcaaatcttccgatatgttgtgagttcacgaagttccactatctatcaagacaaatacaatagcgtcaagaggagagaccgcggttggcgtcttgccttcgatgtaggactgatatgttttagtctgatggcttttggtcctttctacatagatgactttgggtggctcgtgtcggcgcgtcgaagcatgtttcgacctggaactggtttgtcggtgaaggttggcttgctgtgttcccggaggtcacaaggtcaagaccaatccgacaaagtgagatggtctggtatgagtgctgataatagccggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

231

Amino Acids

25.38

Weight (kDa)

5.06

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccII	CGCG	2 cut(s)	468, 565
AciI	CCGC	4 cut(s)	134, 349, 466, 468
AcoI	YGGCCR	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	475
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	3 cut(s)	215, 355, 590
AgsI	TTSAA	2 cut(s)	317, 344
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	241, 456
AoxI	GGCC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	524
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	2 cut(s)	122, 613
AvaII	GGWCC	1 cut(s)	524
BauI	CACGAG	1 cut(s)	554
BccI	CCATC	7 cut(s)	68, 161, 217, 268, 314, 508, 657
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	241, 456
Bme1390I	CCNGG	2 cut(s)	585, 625
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmrFI	CCNGG	2 cut(s)	585, 625
BmsI	GCATC	2 cut(s)	226, 308
BoxI	GACNNNNGTC	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
BpmI	CTGGAG	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	625
BsaBI	GATNNNNATC	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	475
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 355, 590
Bse118I	RCCGGY	1 cut(s)	690
Bse1I	ACTGG	2 cut(s)	213, 595
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	3 cut(s)	209, 279, 299
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	215, 355, 590
BseMII	CTCAG	1 cut(s)	136
BseNI	ACTGG	2 cut(s)	213, 595
BseRI	GAGGAG	2 cut(s)	308, 472
BseX3I	CGGCCG	1 cut(s)	9
Bsh1236I	CGCG	2 cut(s)	468, 565
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	625, 691
BslI	CCNNNNNNNGG	3 cut(s)	215, 355, 590
BsmAI	GTCTC	2 cut(s)	241, 456
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	4 cut(s)	134, 349, 466, 468
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	135
BspFNI	CGCG	2 cut(s)	468, 565
BspTNI	GGTCTC	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	690
BsrI	ACTGG	2 cut(s)	213, 595
BssAI	RCCGGY	1 cut(s)	690
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	1 cut(s)	40
BssNI	GRCGYC	1 cut(s)	475
BssSI	CACGAG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	614
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	3 cut(s)	209, 279, 299
BstFNI	CGCG	2 cut(s)	468, 565
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	2 cut(s)	241, 456
BstMBI	GATC	1 cut(s)	40
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	577
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	583, 623
BstUI	CGCG	2 cut(s)	468, 565
BstZI	CGGCCG	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	3 cut(s)	209, 279, 299
BtsIMutI	CAGTG	3 cut(s)	130, 165, 220
Cac8I	GCNNGC	1 cut(s)	614
CfoI	GCGC	1 cut(s)	565
Cfr10I	RCCGGY	1 cut(s)	690
Cfr13I	GGNCC	1 cut(s)	524
Cfr42I	CCGCGG	1 cut(s)	469
CseI	GACGC	3 cut(s)	439, 464, 554
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	1 cut(s)	574
CviJI	RGCY	7 cut(s)	11, 185, 332, 518, 553, 612, 690
CviKI_1	RGCY	7 cut(s)	11, 185, 332, 518, 553, 612, 690
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DraIII	CACNNNGTG	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	9
EagI	CGGCCG	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	524
Eco52I	CGGCCG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	583
FaeI	CATG	1 cut(s)	577
FaiI	YATR	7 cut(s)	117, 263, 402, 502, 536, 575, 674
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	1 cut(s)	573
FokI	GGATG	3 cut(s)	196, 286, 286
GlaI	GCGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	625, 691
HgaI	GACGC	3 cut(s)	439, 464, 554
HhaI	GCGC	1 cut(s)	565
Hin1I	GRCGYC	1 cut(s)	475
Hin1II	CATG	1 cut(s)	577
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	2 cut(s)	5, 155
HpaII	CCGG	2 cut(s)	625, 691
HphI	GGTGA	2 cut(s)	122, 613
Hpy166II	GTNNAC	3 cut(s)	148, 379, 413
Hpy188I	TCNGA	5 cut(s)	91, 370, 398, 513, 652
Hpy188III	TCNNGA	4 cut(s)	414, 434, 454, 641
Hpy8I	GTNNAC	3 cut(s)	148, 379, 413
Hpy99I	CGWCG	1 cut(s)	570
HpyAV	CCTTC	2 cut(s)	493, 598
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	2 cut(s)	30, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	475
Hsp92II	CATG	1 cut(s)	577
HspAI	GCGC	1 cut(s)	563
KspI	CCGCGG	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	7 cut(s)	171, 226, 570, 576, 597, 638, 654
LweI	GCATC	2 cut(s)	226, 308
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	630
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	4 cut(s)	237, 245, 329, 385
MluCI	AATT	2 cut(s)	66, 141
MmeI	TCCRAC	3 cut(s)	118, 202, 675
MnlI	CCTC	8 cut(s)	100, 131, 206, 286, 289, 376, 450, 621
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	468
MspI	CCGG	2 cut(s)	625, 691
MspR9I	CCNGG	2 cut(s)	585, 625
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	2 cut(s)	468, 565
MwoI	GCNNNNNNNGC	1 cut(s)	17
NciI	CCSGG	1 cut(s)	625
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	630
NspI	RCATGY	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	5, 155
PflMI	CCANNNNNTGG	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	623
PshAI	GACNNNNGTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	524
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SacII	CCGCGG	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	585, 625
SfaNI	GCATC	2 cut(s)	226, 308
Sfr303I	CCGCGG	1 cut(s)	469
SgrBI	CCGCGG	1 cut(s)	469
SinI	GGWCC	1 cut(s)	524
Sse9I	AATT	2 cut(s)	66, 141
SsiI	CCGC	4 cut(s)	134, 349, 466, 468
StyD4I	CCNGG	2 cut(s)	583, 623
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	4 cut(s)	72, 486, 568, 580
TasI	AATT	2 cut(s)	66, 141
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	5, 155
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	3 cut(s)	130, 165, 220
TseFI	GTSAC	1 cut(s)	630
Tsp45I	GTSAC	1 cut(s)	630
TspRI	CASTG	3 cut(s)	130, 165, 220
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	524
XceI	RCATGY	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.