Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003500.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

117657 .. 118486

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggcggatgttctggcccagcccttttggggtgaggctgaggatcgctctggccgacaaaggcatcaagtacgagtacaaggaagaggacctggagaacaagagcccactcttgctgcagtagaatccggtttacaagcagatcccggttctcattcacaagggcaaagcgttgctagaagtggagcttggagacaagcctttctttgggggcgagaccctcggggtcgtggacgtgtcactcgttcctttcttttctggttctctgtgtatgagaaatttggtaacttcagtatagagctggagtgcccaaagttcaatgcttggattaaaaggtgtttggagaaggagagtgtgtccaagtcccttccagaccaggataagatctttgacattgttgtggatatcaggaaaaagcttggaatgatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

143

Amino Acids

16.26

Weight (kDa)

9.34

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	51, 137
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	274
AfaI	GTAC	2 cut(s)	72, 78
AfiI	CCNNNNNNNGG	2 cut(s)	29, 207
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	319
AjiI	CACGTC	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	91, 375
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	3 cut(s)	188, 301, 418
AluI	AGCT	3 cut(s)	188, 301, 418
Alw26I	GTCTC	2 cut(s)	187, 210
AlwI	GGATC	2 cut(s)	51, 137
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	2 cut(s)	15, 52
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	16, 89
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	93, 377
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	187, 210
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	117
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	93, 147, 377
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	222
BmgBI	CACGTC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	16, 89
BmrFI	CCNGG	3 cut(s)	93, 147, 377
BmsI	GCATC	1 cut(s)	73
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpmI	CTGGAG	2 cut(s)	114, 323
Bpu10I	CCTNAGC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 207
BseBI	CCWGG	2 cut(s)	93, 377
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	29, 207
BseMII	CTCAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	18
BshFI	GGCC	2 cut(s)	17, 54
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	129, 147
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	29, 207
BsmAI	GTCTC	2 cut(s)	187, 210
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	17, 54
Bso31I	GGTCTC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	108, 311
Bsp143I	GATC	3 cut(s)	43, 142, 384
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	17, 54
BspCNI	CTCAG	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	2 cut(s)	51, 137
BspTNI	GGTCTC	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	3 cut(s)	43, 142, 384
Bst2UI	CCWGG	2 cut(s)	93, 377
Bst6I	CTCTTC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	3 cut(s)	46, 145, 387
BstMAI	GTCTC	2 cut(s)	187, 210
BstMBI	GATC	3 cut(s)	43, 142, 384
BstNI	CCWGG	2 cut(s)	93, 377
BstSCI	CCNGG	3 cut(s)	91, 145, 375
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	142, 384
BstYI	RGATCY	2 cut(s)	142, 384
BsuRI	GGCC	2 cut(s)	17, 54
BtrI	CACGTC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	16, 89
Csp6I	GTAC	2 cut(s)	71, 77
CviJI	RGCY	9 cut(s)	17, 22, 38, 54, 106, 188, 200, 301, 418
CviKI_1	RGCY	9 cut(s)	17, 22, 38, 54, 106, 188, 200, 301, 418
CviQI	GTAC	2 cut(s)	71, 77
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	3 cut(s)	45, 144, 386
DpnII	GATC	3 cut(s)	43, 142, 384
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	2 cut(s)	91, 375
EcoRV	GATATC	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	108
FaiI	YATR	2 cut(s)	273, 296
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 189, 221
FaqI	GGGAC	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	22
GsuI	CTGGAG	2 cut(s)	114, 323
HaeIII	GGCC	2 cut(s)	17, 54
HapII	CCGG	2 cut(s)	129, 147
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	2 cut(s)	129, 147
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	134, 233
Hpy188III	TCNNGA	2 cut(s)	371, 409
Hpy8I	GTNNAC	2 cut(s)	134, 233
HpyAV	CCTTC	2 cut(s)	340, 377
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	43, 142, 384
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	2 cut(s)	238, 284
MalI	GATC	3 cut(s)	45, 144, 386
MboI	GATC	3 cut(s)	43, 142, 384
MboII	GAAGA	1 cut(s)	96
MflI	RGATCY	2 cut(s)	142, 384
MhlI	GDGCHC	2 cut(s)	108, 311
MluCI	AATT	1 cut(s)	278
MnlI	CCTC	4 cut(s)	28, 34, 80, 231
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	2 cut(s)	129, 147
MspR9I	CCNGG	3 cut(s)	93, 147, 377
MvaI	CCWGG	2 cut(s)	93, 377
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	3 cut(s)	43, 142, 384
NmuCI	GTSAC	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	2 cut(s)	52, 241
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	2 cut(s)	91, 375
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	2 cut(s)	91, 375
PspPI	GGNCC	2 cut(s)	16, 89
PspPPI	RGGWCCY	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	142, 384
RsaI	GTAC	2 cut(s)	72, 78
RsaNI	GTAC	2 cut(s)	71, 77
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	43, 142, 384
Sau96I	GGNCC	2 cut(s)	16, 89
ScrFI	CCNGG	3 cut(s)	93, 147, 377
SduI	GDGCHC	2 cut(s)	108, 311
SetI	ASST	6 cut(s)	94, 190, 238, 303, 338, 420
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	3 cut(s)	91, 145, 375
TaiI	ACGT	1 cut(s)	238
TasI	AATT	1 cut(s)	278
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	278
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.