Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003500.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

139860 .. 140443

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggcggatgagattgttttgttggatttctggatcagcccttttgggatgagggtcaagaccgctctagcggagaaaggcatcgagtacgagtacaaggaccaggacttgatgaacaagaggccactcttgctgcagtccaatctagttcacaagaagatcccggttctcattcataatggcaaacccatctccaggttctgggccgactttgttgacaaaaagtttgttgattgtgcgactaaggtatggacaaccaaaggagatgaacatgaagcatcaaagaagggcttccttgaatcaattaaattgctagtaggagagcttggagacaagcctttctttggggtgagacccttggattcgttgacgtctcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

126

Amino Acids

14.42

Weight (kDa)

7.84

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	7 - 64	1.2e-11	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 64	2.3e-09	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 65	2.2e-07	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	201
AccBSI	CCGCTC	1 cut(s)	65
AciI	CCGC	3 cut(s)	5, 63, 71
AclWI	GGATC	2 cut(s)	41, 154
AcyI	GRCGYC	1 cut(s)	371
AfaI	GTAC	2 cut(s)	89, 95
AfiI	CCNNNNNNNGG	3 cut(s)	195, 201, 344
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	2 cut(s)	102, 194
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	324, 346
AlwI	GGATC	2 cut(s)	41, 154
AlwNI	CAGNNNCTG	1 cut(s)	201
AoxI	GGCC	2 cut(s)	122, 204
ApeKI	GCWGC	1 cut(s)	133
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp700I	GAANNNNTTC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	100, 204
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	104, 196
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	324, 346
BfaI	CTAG	4 cut(s)	68, 146, 314, 379
BfmI	CTRYAG	1 cut(s)	134
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	3 cut(s)	104, 164, 196
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	100, 204
BmrFI	CCNGG	3 cut(s)	104, 164, 196
BmsI	GCATC	2 cut(s)	90, 287
BpmI	CTGGAG	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 201, 344
BseBI	CCWGG	2 cut(s)	104, 196
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	13, 54
BseLI	CCNNNNNNNGG	3 cut(s)	195, 201, 344
BseXI	GCAGC	1 cut(s)	120
BshFI	GGCC	2 cut(s)	124, 206
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	3 cut(s)	195, 201, 344
BsmAI	GTCTC	2 cut(s)	324, 346
BsnI	GGCC	2 cut(s)	124, 206
Bso31I	GGTCTC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	33, 159
BspACI	CCGC	3 cut(s)	5, 63, 71
BspANI	GGCC	2 cut(s)	124, 206
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	41, 154
BspTNI	GGTCTC	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	33, 159
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	104, 196
BstACI	GRCGYC	1 cut(s)	371
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	13, 54
BstKTI	GATC	2 cut(s)	36, 162
BstMAI	GTCTC	2 cut(s)	324, 346
BstMBI	GATC	2 cut(s)	33, 159
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	2 cut(s)	104, 196
BstSCI	CCNGG	3 cut(s)	102, 162, 194
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	124, 206
BtsCI	GGATG	2 cut(s)	13, 54
CaiI	CAGNNNCTG	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	100, 204
Csp6I	GTAC	2 cut(s)	88, 94
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	6 cut(s)	39, 124, 206, 291, 325, 337
CviKI_1	RGCY	6 cut(s)	39, 124, 206, 291, 325, 337
CviQI	GTAC	2 cut(s)	88, 94
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	35, 161
DpnII	GATC	2 cut(s)	33, 159
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	102, 194
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	275
FaiI	YATR	3 cut(s)	177, 250, 273
FalI	AAGNNNNNCTT	4 cut(s)	275, 307, 326, 358
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	2 cut(s)	20, 61
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	4 cut(s)	68, 146, 314, 379
GluI	GCNGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	124, 206
HapII	CCGG	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	275
HincII	GTYRAC	2 cut(s)	217, 369
HindII	GTYRAC	2 cut(s)	217, 369
HinfI	GANTC	2 cut(s)	299, 362
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	3 cut(s)	151, 217, 369
Hpy188III	TCNNGA	2 cut(s)	31, 58
Hpy8I	GTNNAC	3 cut(s)	151, 217, 369
HpyAV	CCTTC	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	33, 159
LpnPI	CCDG	7 cut(s)	16, 89, 116, 177, 181, 187, 208
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	2 cut(s)	90, 287
MaeI	CTAG	4 cut(s)	68, 146, 314, 379
MaeII	ACGT	1 cut(s)	371
MalI	GATC	2 cut(s)	35, 161
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	2 cut(s)	33, 159
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	1 cut(s)	159
MluCI	AATT	2 cut(s)	303, 308
MnlI	CCTC	2 cut(s)	45, 114
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	1 cut(s)	306
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	3 cut(s)	104, 164, 196
MvaI	CCWGG	2 cut(s)	104, 196
MwoI	GCNNNNNNNGC	1 cut(s)	130
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	2 cut(s)	33, 159
NlaIII	CATG	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	299, 362
PflMI	CCANNNNNTGG	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	135
Psp6I	CCWGG	2 cut(s)	102, 194
PspGI	CCWGG	2 cut(s)	102, 194
PspPI	GGNCC	2 cut(s)	100, 204
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	2 cut(s)	89, 95
RsaNI	GTAC	2 cut(s)	88, 94
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	33, 159
Sau96I	GGNCC	2 cut(s)	100, 204
ScrFI	CCNGG	3 cut(s)	104, 164, 196
SetI	ASST	4 cut(s)	200, 249, 327, 374
SfaNI	GCATC	2 cut(s)	90, 287
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	2 cut(s)	303, 308
SsiI	CCGC	3 cut(s)	5, 63, 71
SspMI	CTAG	4 cut(s)	68, 146, 314, 379
StyD4I	CCNGG	3 cut(s)	102, 162, 194
StyI	CCWWGG	1 cut(s)	357
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	303, 308
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	299, 362
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	128, 164, 282, 288
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	4 cut(s)	68, 146, 314, 379
ZraI	GACGTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.