Rmu_sc0003514.1_g000010

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003514.1
N/A
Physical Location & Seq
Forward (+)
58073 .. 60302
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1179 bp
atggccgccgctccttcaccgacctccggctatcctaatacgacgtacgttctctacgcctccatctccagcctgatgcccatattcaaagctcacaatctcctcggctacgtcgactgctccatcacgccaccagagaaaaacttggttagaaagtcttcttcctcctcctcctcttcttcttctgcggccaagactcgattaaagttgggagcttcaggtgtgattccacctttggtgactatgctggtgtctccttacccagatactcgccaagcttctctgctagctcttctcaatctcgctgttcgctatgaccagtatgaagaagaaggaataagaaggagaaggaggaggaggaggaagaagaagaagaagaagaagaagaagaagaaggaagaagaaaaagaagagggaagaaggaggagaaggaagaagaagaaacaaaaaaaaattgcagaagaagaaggaataagaaggagaaggaggaggaggaggaagaagaagaagaagaagaagaagaagaaggaggaagaagaaaaagaagagggaagaaggaggagaaggaagaagaagaagaaggaggaggaggaagaagaagaagaaggaaggaggaggaagaagaagaagaagaaggagaaggaagaagaaaaagaagagggaagaaggaggagaaggaagaagaagaagaagaaaaaaaattgcagaagaagaagaagaaaaattgtagaagaagaagaaggagaagaagaaggagaaggaagaagaaaaagaagagggaaggaggagaaggatgaagaaaaattgcagaagaagaagaaggaagaaggaggaagaaggagaaggaagaagaaaaagaagagggaagaaggagcagaaggaagaagaagaagaaggaaggaggaagaagaagaagaaaagaagagggaaggaggagaaggaagaaggaagaagaagaagaaaagaagagggaaggaggagaaggaagaaggaagaagaagaagaaaagaagagggaaggaggagaaggaagaaggaagaagaagaagaaaagaagagggaaggaggagaaggaagaaggaagaagaagaagaaaagaagagggaaggaggagaaggaagaaggaagaagaagaagaaaagaagagggaaggaggagaaggaagaaggaagaagaataa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

392

Amino Acids

48.04

Weight (kDa)

10.77

Isoelectric Point (pI)

146.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 114
AciI CCGC 3 cut(s) 6, 9, 188
AcoI YGGCCR 2 cut(s) 3, 189
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 4 cut(s) 92, 215, 278, 290
AluI AGCT 4 cut(s) 92, 215, 278, 290
Alw26I GTCTC 1 cut(s) 258
AoxI GGCC 2 cut(s) 3, 189
Asp700I GAANNNNTTC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 9, 250
AsuNHI GCTAGC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 150
BccI CCATC 2 cut(s) 71, 131
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 287
BisI GCNGC 3 cut(s) 6, 9, 189
BlsI GCNGC 3 cut(s) 7, 10, 190
BmsI GCATC 1 cut(s) 66
BmtI GCTAGC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 799
BseLI CCNNNNNNNGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 319
BshFI GGCC 2 cut(s) 5, 191
BsiSI CCGG 1 cut(s) 27
BsiWI CGTACG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 258
BsnI GGCC 2 cut(s) 5, 191
BspACI CCGC 3 cut(s) 6, 9, 188
BspANI GGCC 2 cut(s) 5, 191
BspOI GCTAGC 1 cut(s) 290
BspQI GCTCTTC 1 cut(s) 297
BsrBI CCGCTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 288
BstF5I GGATG 1 cut(s) 799
BstMAI GTCTC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 2 cut(s) 5, 191
BtsCI GGATG 1 cut(s) 799
Cac8I GCNNGC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 46
CviJI RGCY 9 cut(s) 5, 30, 72, 92, 108, 191, 215, 278, 290
CviKI_1 RGCY 9 cut(s) 5, 30, 72, 92, 108, 191, 215, 278, 290
CviQI GTAC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 3, 189
Eco57I CTGAAG 1 cut(s) 201
FaiI YATR 4 cut(s) 83, 245, 315, 324
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 6, 9, 189
FokI GGATG 1 cut(s) 806
Fsp4HI GCNGC 3 cut(s) 6, 9, 189
FspBI CTAG 1 cut(s) 287
GluI GCNGC 3 cut(s) 6, 9, 189
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 2 cut(s) 5, 191
HapII CCGG 1 cut(s) 27
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 2 cut(s) 196, 226
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 9, 250
Hpy166II GTNNAC 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 2 cut(s) 46, 116
HpyCH4IV ACGT 3 cut(s) 44, 48, 111
HpyCH4V TGCA 3 cut(s) 458, 705, 808
HpySE526I ACGT 3 cut(s) 44, 48, 111
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 4 cut(s) 16, 125, 212, 872
LpnPI CCDG 8 cut(s) 40, 82, 86, 147, 204, 233, 276, 332
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 287
MaeII ACGT 3 cut(s) 44, 48, 111
MaeIII GTNAC 1 cut(s) 238
MbiI CCGCTC 1 cut(s) 11
MluCI AATT 4 cut(s) 453, 700, 723, 803
MlyI GAGTC 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 157
MseI TTAA 1 cut(s) 203
MspI CCGG 1 cut(s) 27
NheI GCTAGC 1 cut(s) 286
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 226
Pfl23II CGTACG 1 cut(s) 45
PkrI GCNGC 3 cut(s) 7, 10, 190
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspLI CGTACG 1 cut(s) 45
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SalI GTCGAC 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 3 cut(s) 6, 9, 189
SchI GAGTC 1 cut(s) 190
SfaNI GCATC 1 cut(s) 66
Sse9I AATT 4 cut(s) 453, 700, 723, 803
SsiI CCGC 3 cut(s) 6, 9, 188
SspMI CTAG 1 cut(s) 287
TaiI ACGT 3 cut(s) 47, 51, 114
TaqI TCGA 2 cut(s) 114, 199
TasI AATT 4 cut(s) 453, 700, 723, 803
TauI GCSGC 3 cut(s) 8, 11, 191
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 339, 810
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 157
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.