Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003516.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10576 .. 11252

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgatctcgctgaatagaagctgcttcctgagcaacgggggcatttctgggaattgtagcccgttctctcaggggcagaagaggcggtcggcttcgctgaaagtggtggctgtagggacgaacgccgccaggaaaggtgaacgaaacggcagcatagtgatggagaacgcagcaaaagaagttgttgagctgaaatctaccgtccatggtggggacaaagacgtgtatggtgaggatactgccagcgaggaccaacctgtcacgccctggagtgtgtctgttgcaaggtctgagcaaagagtaatttgctttactaatataatattgtctcttgtaatatcgtcatgtatgttgttcttgcaattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006090 GO:0006108 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019752 GO:0022607 GO:0032787 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0046983 GO:0050897 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

122

Amino Acids

13.11

Weight (kDa)

8.43

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AciI	CCGC	2 cut(s)	85, 126
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	222
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	128, 266
AluBI	AGCT	2 cut(s)	21, 190
AluI	AGCT	2 cut(s)	21, 190
Alw26I	GTCTC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	21, 150, 170
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	149, 242
AvaII	GGWCC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	8, 162, 182
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	2 cut(s)	130, 268
BciVI	GTATCC	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	229
BisI	GCNGC	4 cut(s)	22, 126, 151, 171
BlsI	GCNGC	4 cut(s)	23, 127, 152, 172
Bme1390I	CCNGG	2 cut(s)	130, 268
Bme18I	GGWCC	1 cut(s)	250
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	250
BmrFI	CCNGG	2 cut(s)	130, 268
BpmI	CTGGAG	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	205, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	130, 268
BseDI	CCNNGG	2 cut(s)	205, 266
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	3 cut(s)	20, 83, 282
BseXI	GCAGC	3 cut(s)	8, 162, 182
Bsh1285I	CGRYCG	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	89
BslFI	GGGAC	2 cut(s)	130, 227
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	2 cut(s)	130, 227
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	2 cut(s)	85, 126
BspCNI	CTCAG	3 cut(s)	21, 82, 283
BssECI	CCNNGG	2 cut(s)	205, 266
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	2 cut(s)	130, 268
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	29, 69, 291
BstDSI	CCRYGG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 39, 82
BstNI	CCWGG	2 cut(s)	130, 268
BstSCI	CCNGG	2 cut(s)	128, 266
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	8, 162, 182
BsuI	GTATCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	205
BtrI	CACGTC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	250
CviAII	CATG	2 cut(s)	206, 345
CviJI	RGCY	5 cut(s)	21, 60, 92, 110, 190
CviKI_1	RGCY	5 cut(s)	21, 60, 92, 110, 190
DdeI	CTNAG	3 cut(s)	29, 69, 291
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	128, 266
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	2 cut(s)	209, 348
FaiI	YATR	6 cut(s)	155, 207, 228, 320, 346, 350
FaqI	GGGAC	2 cut(s)	130, 227
FatI	CATG	2 cut(s)	205, 344
Fnu4HI	GCNGC	4 cut(s)	22, 126, 151, 171
Fsp4HI	GCNGC	4 cut(s)	22, 126, 151, 171
GluI	GCNGC	4 cut(s)	22, 126, 151, 171
GsuI	CTGGAG	1 cut(s)	289
Hin1II	CATG	2 cut(s)	209, 348
HphI	GGTGA	2 cut(s)	149, 242
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	284, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 39, 82
HpyF3I	CTNAG	3 cut(s)	29, 69, 291
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	209, 348
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	9 cut(s)	33, 41, 56, 115, 142, 253, 256, 270, 280
Lsp1109I	GCAGC	3 cut(s)	8, 162, 182
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	91
MluCI	AATT	3 cut(s)	52, 303, 362
MnlI	CCTC	3 cut(s)	75, 226, 241
MslI	CAYNNNNRTG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	130, 268
MvaI	CCWGG	2 cut(s)	130, 268
MwoI	GCNNNNNNNGC	3 cut(s)	30, 39, 82
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	209, 348
NmuCI	GTSAC	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	23, 127, 152, 172
Psp6I	CCWGG	2 cut(s)	128, 266
PspGI	CCWGG	2 cut(s)	128, 266
PspPI	GGNCC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	158
SatI	GCNGC	4 cut(s)	22, 126, 151, 171
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	130, 268
SetI	ASST	6 cut(s)	23, 139, 192, 225, 259, 290
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	52, 303, 362
SsiI	CCGC	2 cut(s)	85, 126
SspI	AATATT	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	128, 266
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	225
TasI	AATT	3 cut(s)	52, 303, 362
TauI	GCSGC	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	3 cut(s)	21, 150, 170
Tsp45I	GTSAC	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.