Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003537.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1149 .. 1726

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggaaccacaaaaccggcatccaaccgaggatggaggaagcaacaaagcagccgagagtagtcctaacatgcattgcacgcagagtaataccaggtggcttcctactagagatcagataagaatcctcaaggagctttacgatgaaaagggagttaagtcccccactgtagagcaggttcagaggatcactctccagctaaaatggtacggagagatcgagaacaagaacgtcttttattggttccagaatcaaagggctcgggagaagctgaagaacaataagctcacttcggatactacttccgatggaggtggtggtcacggtggtggctcttacatttctcttgagctcagcctttcctgcgagggcaaagctagaaaaagtttccggagccgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

133

Amino Acids

15.16

Weight (kDa)

9.33

Isoelectric Point (pI)

64.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 90	5.8e-12	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	92
AleI	CACNNNNGTG	1 cut(s)	327
AluBI	AGCT	6 cut(s)	136, 199, 271, 286, 352, 377
AluI	AGCT	6 cut(s)	136, 199, 271, 286, 352, 377
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	390
ApeKI	GCWGC	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	261
BanII	GRGCYC	2 cut(s)	262, 354
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 302
BciT130I	CCWGG	1 cut(s)	94
BciVI	GTATCC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	108, 378
BfmI	CTRYAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	166
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	51, 397
BlpI	GCTNAGC	1 cut(s)	353
BlsI	GCNGC	2 cut(s)	52, 398
Bme1390I	CCNGG	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	261
BmiI	GGNNCC	3 cut(s)	6, 245, 395
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	2 cut(s)	113, 368
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	390
Bse118I	RCCGGY	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	19, 37
BseJI	GATNNNNATC	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	16, 391
BslFI	GGGAC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	262, 354
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	112, 186, 216
Bsp1720I	GCTNAGC	1 cut(s)	353
BspACI	CCGC	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	390
BspLI	GGNNCC	3 cut(s)	6, 245, 395
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	112, 186, 216
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	169, 326
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	19, 37
BstKTI	GATC	3 cut(s)	115, 189, 219
BstMBI	GATC	3 cut(s)	112, 186, 216
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 363
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	19, 37
BtsIMutI	CAGTG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	15
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	70
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	3 cut(s)	114, 188, 218
DpnII	GATC	3 cut(s)	112, 186, 216
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	2 cut(s)	262, 354
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	262, 354
FaeI	CATG	1 cut(s)	73
FaiI	YATR	1 cut(s)	71
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	51, 397
FokI	GGATG	2 cut(s)	6, 44
FriOI	GRGCYC	2 cut(s)	262, 354
Fsp4HI	GCNGC	2 cut(s)	51, 397
FspBI	CTAG	2 cut(s)	108, 378
GluI	GCNGC	2 cut(s)	51, 397
GsuI	CTGGAG	1 cut(s)	179
HapII	CCGG	2 cut(s)	16, 391
Hin1II	CATG	1 cut(s)	73
HinfI	GANTC	2 cut(s)	123, 250
HpaII	CCGG	2 cut(s)	16, 391
Hpy188I	TCNGA	4 cut(s)	117, 183, 295, 307
Hpy188III	TCNNGA	5 cut(s)	220, 247, 263, 347, 391
HpyCH4III	ACNGT	2 cut(s)	169, 326
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	73, 78
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 363
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	73
Kpn2I	TCCGGA	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	112, 186, 216
LmnI	GCTCC	2 cut(s)	133, 393
LpnPI	CCDG	7 cut(s)	29, 79, 106, 161, 209, 260, 376
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	28
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	108, 378
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	3 cut(s)	114, 188, 218
MboI	GATC	3 cut(s)	112, 186, 216
MboII	GAAGA	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	262, 354
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	6 cut(s)	22, 29, 137, 177, 305, 361
Mph1103I	ATGCAT	1 cut(s)	75
MroI	TCCGGA	1 cut(s)	390
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	2 cut(s)	16, 391
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	79, 363
NdeII	GATC	3 cut(s)	112, 186, 216
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	3 cut(s)	6, 245, 395
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	123, 250
PkrI	GCNGC	2 cut(s)	52, 398
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	3 cut(s)	6, 245, 395
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	51, 397
Sau3AI	GATC	3 cut(s)	112, 186, 216
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	2 cut(s)	262, 354
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	128, 347
SmoI	CTYRAG	2 cut(s)	128, 347
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	2 cut(s)	108, 378
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	169, 326
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	219
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	2 cut(s)	123, 250
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	159
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	172
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	2 cut(s)	108, 378
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.