Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003541.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

142501 .. 144900

Gene Structure 2400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atggggtttttgttttcacacagggctctgctactacagaaagtgcttttcctccacgcatttcctcagtttgaatctgtgaagcaaaaccctggaattgctgagagtctcctttttgatcacctttggaggattgtatggttcaactccaatttcactctttcatttctcaattctgcttctgggagtaaggttgaaagccacattttctgtgggagttccttttctgaaatcgtatacaacagggcagaaggggactctgcaagggacctgattatcaggctcagaaggagcaacagtggtgatgtctacgccaaccgtacatgtggatgggtccgtgatatgcttctgggaaaagagtgcaaggacattgacattgctttggaagatatgatgggcagcaaatttgttgagaaggtgagaaactacttgttgtctgtgggggaagaggttcaaggaatctctatcattccaagtaatcccgatcaatcaaaacatttggaaacggcaaggatgcgcatcttaaatgtatgggttgattttgtgaacttacgctgtgaagagtacagtgatgatagccgcattcctactattgtaaattcttgctctgggatgtatggatcttctagagttttgtttgttactgatttgatctttaggacattagtcacattatcttactttggaataaggcaaaagtatggcacaccagaacaggatgcactaagaagggatctaactatttacagcttattttacaatatcaataccaaatccattgaagattggactaatagaggagttgaagatctaaaatgtgggaaaattgctactgctttaccactaaaggatacatttatggaggatccgctacgagttcttcgagctatccgttttggtgcaaggttcggacaactaaaggaagctgctgcctgtgatgaagtgaaagctgctctatcagctaaaattagcagagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

326

Amino Acids

37.09

Weight (kDa)

7.58

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	110 - 276	9.7e-25	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	518
AccI	GTMKAC	2 cut(s)	237, 309
AciI	CCGC	2 cut(s)	580, 869
AclWI	GGATC	4 cut(s)	628, 741, 860, 873
AcsI	RAATTY	2 cut(s)	404, 598
AfaI	GTAC	2 cut(s)	322, 566
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	6 cut(s)	74, 145, 197, 455, 782, 806
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	5 cut(s)	750, 887, 926, 950, 962
AluI	AGCT	5 cut(s)	750, 887, 926, 950, 962
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	4 cut(s)	628, 741, 860, 873
ApeKI	GCWGC	4 cut(s)	399, 926, 929, 950
ApoI	RAATTY	2 cut(s)	404, 598
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	268, 334
AsuHPI	GGTGA	3 cut(s)	113, 314, 430
AvaII	GGWCC	2 cut(s)	268, 334
BamHI	GGATCC	1 cut(s)	865
BanII	GRGCYC	1 cut(s)	28
BbvI	GCAGC	4 cut(s)	411, 913, 916, 937
BccI	CCATC	2 cut(s)	324, 388
BceAI	ACGGC	1 cut(s)	522
BciT130I	CCWGG	1 cut(s)	93
BciVI	GTATCC	1 cut(s)	844
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	844
BglII	AGATCT	1 cut(s)	808
BisI	GCNGC	5 cut(s)	400, 580, 927, 930, 951
BlsI	GCNGC	5 cut(s)	401, 581, 928, 931, 952
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	2 cut(s)	268, 334
BmgT120I	GGNCC	2 cut(s)	268, 334
BmiI	GGNNCC	3 cut(s)	269, 335, 867
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	504, 528, 709
BoxI	GACNNNNGTC	1 cut(s)	665
BsaBI	GATNNNNATC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bse3DI	GCAATG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	4 cut(s)	335, 519, 618, 724
BseJI	GATNNNNATC	1 cut(s)	518
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	3 cut(s)	80, 93, 298
BseRI	GAGGAG	1 cut(s)	813
BseXI	GCAGC	4 cut(s)	411, 913, 916, 937
BslFI	GGGAC	2 cut(s)	269, 281
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	269, 281
BsmI	GAATGC	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	7 cut(s)	118, 484, 620, 651, 733, 808, 865
BspACI	CCGC	2 cut(s)	580, 869
BspCNI	CTCAG	3 cut(s)	79, 94, 297
BspLI	GGNNCC	3 cut(s)	269, 335, 867
BspPI	GGATC	4 cut(s)	628, 741, 860, 873
BsrDI	GCAATG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	7 cut(s)	118, 484, 620, 651, 733, 808, 865
BssNAI	GTATAC	1 cut(s)	238
Bst1107I	GTATAC	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	3 cut(s)	299, 320, 569
Bst6I	CTCTTC	2 cut(s)	441, 555
BstDEI	CTNAG	4 cut(s)	66, 102, 284, 725
BstF5I	GGATG	4 cut(s)	335, 519, 618, 724
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	7 cut(s)	121, 487, 623, 654, 736, 811, 868
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	7 cut(s)	118, 484, 620, 651, 733, 808, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	959
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	327
BstPAI	GACNNNNGTC	1 cut(s)	665
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	35
BstV1I	GCAGC	4 cut(s)	411, 913, 916, 937
BstX2I	RGATCY	4 cut(s)	620, 733, 808, 865
BstYI	RGATCY	4 cut(s)	620, 733, 808, 865
BstZ17I	GTATAC	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	844
BtsCI	GGATG	4 cut(s)	335, 519, 618, 724
BtsIMutI	CAGTG	2 cut(s)	304, 574
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	268, 334
Csp6I	GTAC	2 cut(s)	321, 565
CviAII	CATG	1 cut(s)	324
CviJI	RGCY	9 cut(s)	26, 201, 283, 579, 750, 887, 926, 950, 962
CviKI_1	RGCY	9 cut(s)	26, 201, 283, 579, 750, 887, 926, 950, 962
CviQI	GTAC	2 cut(s)	321, 565
DdeI	CTNAG	4 cut(s)	66, 102, 284, 725
DpnI	GATC	7 cut(s)	120, 486, 622, 653, 735, 810, 867
DpnII	GATC	7 cut(s)	118, 484, 620, 651, 733, 808, 865
Eam1104I	CTCTTC	2 cut(s)	441, 555
EarI	CTCTTC	2 cut(s)	441, 555
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	2 cut(s)	268, 334
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	28
FaeI	CATG	1 cut(s)	327
FaiI	YATR	9 cut(s)	139, 238, 325, 344, 392, 532, 618, 702, 860
FaqI	GGGAC	2 cut(s)	269, 281
FatI	CATG	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	2 cut(s)	237, 309
Fnu4HI	GCNGC	5 cut(s)	400, 580, 927, 930, 951
FokI	GGATG	4 cut(s)	342, 526, 625, 731
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	5 cut(s)	400, 580, 927, 930, 951
FspAI	RTGCGCAY	1 cut(s)	518
FspBI	CTAG	1 cut(s)	627
FspI	TGCGCA	1 cut(s)	518
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	5 cut(s)	400, 580, 927, 930, 951
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	1 cut(s)	327
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	4 cut(s)	74, 106, 257, 459
HphI	GGTGA	3 cut(s)	113, 314, 430
Hpy166II	GTNNAC	3 cut(s)	238, 310, 547
Hpy188I	TCNGA	3 cut(s)	229, 287, 911
Hpy188III	TCNNGA	2 cut(s)	482, 627
Hpy8I	GTNNAC	3 cut(s)	238, 310, 547
HpyAV	CCTTC	4 cut(s)	245, 282, 409, 723
HpyCH4III	ACNGT	3 cut(s)	299, 320, 569
HpyCH4V	TGCA	4 cut(s)	263, 363, 722, 902
HpyF10VI	GCNNNNNNNGC	1 cut(s)	959
HpyF3I	CTNAG	4 cut(s)	66, 102, 284, 725
Hsp92II	CATG	1 cut(s)	327
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	7 cut(s)	118, 484, 620, 651, 733, 808, 865
LmnI	GCTCC	1 cut(s)	291
Lsp1109I	GCAGC	4 cut(s)	411, 913, 916, 937
LweI	GCATC	3 cut(s)	504, 528, 709
MaeI	CTAG	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	640, 667
MalI	GATC	7 cut(s)	120, 486, 622, 653, 735, 810, 867
MboI	GATC	7 cut(s)	118, 484, 620, 651, 733, 808, 865
MboII	GAAGA	7 cut(s)	398, 458, 572, 615, 794, 818, 872
MflI	RGATCY	4 cut(s)	620, 733, 808, 865
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	7 cut(s)	96, 151, 172, 404, 598, 825, 966
MlyI	GAGTC	2 cut(s)	115, 251
MnlI	CCTC	6 cut(s)	62, 75, 123, 442, 791, 856
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	524
MslI	CAYNNNNRTG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	959
NdeII	GATC	7 cut(s)	118, 484, 620, 651, 733, 808, 865
NlaIII	CATG	1 cut(s)	327
NlaIV	GGNNCC	3 cut(s)	269, 335, 867
NmuCI	GTSAC	1 cut(s)	667
NsbI	TGCGCA	1 cut(s)	518
NspI	RCATGY	1 cut(s)	327
PciI	ACATGT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	2 cut(s)	880, 889
PctI	GAATGC	1 cut(s)	582
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	74, 459
PkrI	GCNGC	5 cut(s)	401, 581, 928, 931, 952
PleI	GAGTC	2 cut(s)	114, 251
PpsI	GAGTC	2 cut(s)	114, 251
PpuMI	RGGWCCY	1 cut(s)	268
PscI	ACATGT	1 cut(s)	323
PshAI	GACNNNNGTC	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	269, 335, 867
PspPI	GGNCC	2 cut(s)	268, 334
PspPPI	RGGWCCY	1 cut(s)	268
PsuI	RGATCY	4 cut(s)	620, 733, 808, 865
RsaI	GTAC	2 cut(s)	322, 566
RsaNI	GTAC	2 cut(s)	321, 565
RseI	CAYNNNNRTG	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	5 cut(s)	400, 580, 927, 930, 951
Sau3AI	GATC	7 cut(s)	118, 484, 620, 651, 733, 808, 865
Sau96I	GGNCC	2 cut(s)	268, 334
SchI	GAGTC	2 cut(s)	115, 251
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	28
SfaNI	GCATC	3 cut(s)	504, 528, 709
SfcI	CTRYAG	1 cut(s)	35
SinI	GGWCC	2 cut(s)	268, 334
SmiMI	CAYNNNNRTG	1 cut(s)	328
Sse9I	AATT	7 cut(s)	96, 151, 172, 404, 598, 825, 966
SsiI	CCGC	2 cut(s)	580, 869
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	3 cut(s)	299, 320, 569
TaqI	TCGA	1 cut(s)	883
TasI	AATT	7 cut(s)	96, 151, 172, 404, 598, 825, 966
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	1 cut(s)	582
TfiI	GAWTC	2 cut(s)	74, 459
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	2 cut(s)	304, 574
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	4 cut(s)	399, 926, 929, 950
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	2 cut(s)	153, 954
TspGWI	ACGGA	2 cut(s)	326, 881
TspRI	CASTG	2 cut(s)	304, 574
VpaK11BI	GGWCC	2 cut(s)	268, 334
XapI	RAATTY	2 cut(s)	404, 598
XbaI	TCTAGA	1 cut(s)	626
XceI	RCATGY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmiI	GTMKAC	2 cut(s)	237, 309
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.