Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003546.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19386 .. 19739

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggcagagcgtttgatccccactctcaaccgtgtcctgattgagcaaattgtcccaccctctaagaccactgccggcattctcttgccggggtcatccgccaagctgaactcagggaaaggggttgctgttggactaggaactaaggataaggccggcaatccgatcccagtggctgtgaaagaaggtgacactattctcttacccgattacggtggcacccaagttaagcttggtgacaaagagttccattaccgggatgtggacgtttgggcactctccatgaatgagttattcggtattacgttttcgaggattatgctattaaggttggatgtaactgataattactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010033 GO:0031974 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

117

Amino Acids

12.65

Weight (kDa)

6.56

Isoelectric Point (pI)

21.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	5 - 84	7.6e-17	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	10, 160
AfiI	CCNNNNNNNGG	3 cut(s)	212, 256, 262
AluBI	AGCT	2 cut(s)	106, 232
AluI	AGCT	2 cut(s)	106, 232
AlwI	GGATC	2 cut(s)	10, 160
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	153
AsuC2I	CCSGG	2 cut(s)	90, 257
AsuHPI	GGTGA	2 cut(s)	200, 248
BaeGI	GKGCMC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BcnI	CCSGG	2 cut(s)	90, 257
BfaI	CTAG	1 cut(s)	137
Bme1390I	CCNGG	2 cut(s)	90, 257
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	90, 257
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BpuMI	CCSGG	2 cut(s)	90, 257
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 256, 262
Bse118I	RCCGGY	2 cut(s)	74, 155
Bse1I	ACTGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	3 cut(s)	95, 265, 340
BseLI	CCNNNNNNNGG	3 cut(s)	212, 256, 262
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	218
BsiSI	CCGG	4 cut(s)	75, 89, 156, 256
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	212, 256, 262
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	15, 165
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	10, 160
BspT107I	GGYRCC	1 cut(s)	218
BsrFI	RCCGGY	2 cut(s)	74, 155
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	2 cut(s)	74, 155
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	2 cut(s)	15, 165
Bst4CI	ACNGT	2 cut(s)	32, 215
BstC8I	GCNNGC	2 cut(s)	76, 157
BstDEI	CTNAG	3 cut(s)	63, 112, 144
BstF5I	GGATG	3 cut(s)	95, 265, 340
BstKTI	GATC	2 cut(s)	18, 168
BstMBI	GATC	2 cut(s)	15, 165
BstSCI	CCNGG	2 cut(s)	88, 255
BstSLI	GKGCMC	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	3 cut(s)	95, 265, 340
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 177
Cac8I	GCNNGC	2 cut(s)	76, 157
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr10I	RCCGGY	2 cut(s)	74, 155
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	4 cut(s)	106, 155, 176, 232
CviKI_1	RGCY	4 cut(s)	106, 155, 176, 232
DdeI	CTNAG	3 cut(s)	63, 112, 144
DpnI	GATC	2 cut(s)	17, 167
DpnII	GATC	2 cut(s)	15, 165
EciI	GGCGGA	1 cut(s)	88
FaeI	CATG	1 cut(s)	286
FaiI	YATR	2 cut(s)	284, 320
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	282
FokI	GGATG	3 cut(s)	82, 272, 347
FspBI	CTAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	4 cut(s)	75, 89, 156, 256
Hin1II	CATG	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	230
HpaII	CCGG	4 cut(s)	75, 89, 156, 256
HphI	GGTGA	2 cut(s)	200, 248
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	32, 215
HpyCH4IV	ACGT	2 cut(s)	267, 305
HpyF3I	CTNAG	3 cut(s)	63, 112, 144
HpySE526I	ACGT	2 cut(s)	267, 305
Hsp92II	CATG	1 cut(s)	286
KroI	GCCGGC	2 cut(s)	74, 155
KroNI	GCCGGC	2 cut(s)	76, 157
Kzo9I	GATC	2 cut(s)	15, 165
LpnPI	CCDG	7 cut(s)	50, 88, 99, 102, 169, 183, 269
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	2 cut(s)	267, 305
MaeIII	GTNAC	3 cut(s)	188, 236, 337
MalI	GATC	2 cut(s)	17, 167
MboI	GATC	2 cut(s)	15, 165
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	2 cut(s)	48, 346
MmeI	TCCRAC	2 cut(s)	112, 312
MnlI	CCTC	2 cut(s)	70, 306
MroNI	GCCGGC	2 cut(s)	74, 155
MseI	TTAA	2 cut(s)	228, 326
MspI	CCGG	4 cut(s)	75, 89, 156, 256
MspR9I	CCNGG	2 cut(s)	90, 257
Mva1269I	GAATGC	1 cut(s)	78
NaeI	GCCGGC	2 cut(s)	76, 157
NciI	CCSGG	2 cut(s)	90, 257
NdeII	GATC	2 cut(s)	15, 165
NgoMIV	GCCGGC	2 cut(s)	74, 155
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	188, 236
PctI	GAATGC	1 cut(s)	78
PdiI	GCCGGC	2 cut(s)	76, 157
PspN4I	GGNNCC	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	228, 326
Sau3AI	GATC	2 cut(s)	15, 165
ScrFI	CCNGG	2 cut(s)	90, 257
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	6 cut(s)	108, 190, 234, 270, 308, 332
Sse9I	AATT	2 cut(s)	48, 346
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	88, 255
TaaI	ACNGT	2 cut(s)	32, 215
TaiI	ACGT	2 cut(s)	270, 308
TaqI	TCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	48, 346
Tru1I	TTAA	2 cut(s)	228, 326
Tru9I	TTAA	2 cut(s)	228, 326
TscAI	CASTG	2 cut(s)	76, 177
TseFI	GTSAC	2 cut(s)	188, 236
Tsp45I	GTSAC	2 cut(s)	188, 236
TspDTI	ATGAA	1 cut(s)	299
TspRI	CASTG	2 cut(s)	76, 177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.